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Table 1 Information of databases used in this study

From: Comprehensive reconstruction and evaluation of Pichia pastoris genome-scale metabolic model that accounts for 1243 ORFs

Abbreviation

Full name

Purpose

Link

KEGG

Kyoto encyclopedia of genes and genomes

Obtain genome annotation, reaction information chemical compounds annotation

http://www.genome.jp/dbget-bin/www_bfind?compound

CheBI

Chemical entities of biological interest

Obtain chemical compounds annotation

https://www.ebi.ac.uk/chebi/

BiGG

Biochemical genetic and genomic knowledgebase

Obtain reaction information and chemical compounds annotation

http://bigg.ucsd.edu/bigg/main.pl

Ensembl fungi

Ensembl fungi

Obtain genome annotations

http://fungi.ensembl.org/index.html

UniProtKB

The universal protein resource knowledgebase

Obtain genome annotations

http://www.uniprot.org/

IMG

The integrated microbial genomes system

Obtain genome annotations

http://img.jgi.doe.gov/

ENZYME

Enzyme nomenclature database

Obtain relations between enzyme and reactions

http://enzyme.expasy.org/