Table 7 Gene expression verification by qRT-PCR
Gene ID | Predicted function (homolog and organism) | RNA-Seq | qRT-PCR | ||||||
|---|---|---|---|---|---|---|---|---|---|
S1/S3 (10Â h) | S1/S2 (10Â h) | S1/S3 (40Â h) | S1/S2 (40Â h) | S1/S3 (10Â h) | S1/S2 (10Â h) | S1/S3 (40Â h) | S1/S2 (40Â h) | ||
190032 | GH 10, endo-1,4-beta-xylanase F1 | 11.24 | 9.96 | 6.05 | 2.58 | 10.69 | 8.42 | 5.50 | 1.93 |
80523 | eglA, GH 12, endoglucanase A | 7.9 | 5.43 | 4.3 | − 2.12 | 6.3 | 4.21 | 4.1 | − 1.1 |
190140 | axhA, GH 62, alpha-l-arabinofuranosidase | 8.36 | 7.59 | 8.47 | 3.08 | 7.41 | 6.38 | 6.54 | 2.01 |
6000119 | mscA, methylcitrate synthase | 3.79 | 2.58 | 0.31 | 0.20 | 3.45 | 2.45 | 0.20 | 0.10 |
12707 | Peptidase aspartic, active site (AP1) (A. phoenicis, apnS) | 2.80 | 1.75 | 5.23 | 1.11 | 2.11 | 1.54 | 4.37 | 1.00 |
7000050 | Acyl-CoA synthetase | 4.47 | 1.06 | 3.86 | 0.45 | 3.98 | 1.01 | 3.55 | 0.22 |
160123 | Synaptic vesicle transporter SVOP and related transporters | 5.22 | 1.07 | 8.53 | 2.92 | 6.45 | 0.67 | 9.36 | 2.44 |
11.172.1 | Amino acid transporters | 6.39 | 4.63 | 5.47 | 3.73 | 7.65 | 5.00 | 6.57 | 2.84 |