Systematic review of publicly available non-Dikarya fungal proteomes for understanding their plant biomass-degrading and bioremediation potentials

Sista Kameshwar, Ayyappa Kumar; Qin, Wensheng

doi:10.1186/s40643-019-0264-6

Bioresources and Bioprocessing

Table 1 List of all the publicly available non-Dikarya fungi considered for our systematic review

From: Systematic review of publicly available non-Dikarya fungal proteomes for understanding their plant biomass-degrading and bioremediation potentials

Phylum	G-Code	Name	Assembly	Genes
Blastocladiomycota	Catan2	Catenaria anguillulae	41,337,528	12,804
Chytridiomycota	Blyhe1	Blyttiomyces helicus	46,472,760	12,167
Chytridiomycota	Caupr1	Caulochytrium protostelioides	10,621,701	3328
Chytridiomycota	Rhihy1	Rhizoclosmatium globosum	57,018,351	16,990
Chytridiomycota	Splpu1	Spizellomyces punctatus	24,131,112	9424
Cryptomycota	Rozal_SC1	Rozella allomycis CSF55	13,461,086	6694
Cryptomycota	Rozal1	Rozella allomycis	11,859,274	6350
Entomophthoromycotina	Conco1	Conidiobolus coronatus	39,903,661	10,635
Glomeromycota	Gigro1	Gigaspora rosea	567,950,182	31,291
Glomeromycota	Gloin1	Rhizophagus irregularis	91,083,792	30,282
Glomeromycota	Rhice1_1	Rhizophagus cerebriforme	136,890,557	21,549
Glomeromycota	Rhidi1	Rhizophagus diaphanus	125,876,003	23,252
Glomeromycota	Rhiir2	Rhizophagus irregularis	136,807,476	26,183
Glomeromycota	RhiirA1	Rhizophagus irregularis	125,868,962	26,659
Glomeromycota	RhiirA4	Rhizophagus irregularis	138,301,208	25,760
Glomeromycota	RhiirA5	Rhizophagus irregularis	131,461,109	26,585
Glomeromycota	RhiirB3	Rhizophagus irregularis	124,893,935	25,164
Glomeromycota	RhiirC2	Rhizophagus irregularis	122,966,682	26,756
Kickxellomycotina	Coere1	Coemansia reversa	21,838,014	7347
Kickxellomycotina	DimcrSC1	Dimargaris cristalligena	30,776,575	7456
Kickxellomycotina	Linpe1	Linderina pennispora	26,202,545	9351
Microsporidia	Antlo1	Antonospora locustae	6074,860	2606
Microsporidia	Enccu1	Encephalitozoon cuniculi	2,497,519	1996
Microsporidia	Enche1	Encephalitozoon hellem	2,251,784	1847
Microsporidia	Encin1	Encephalitozoon intestinalis	2,216,898	1833
Microsporidia	Encro1	Encephalitozoon romaleae	2,187,595	1831
Microsporidia	Entbi1	Enterocytozoon bieneusi	3,860,738	3632
Microsporidia	Nempa1	Nematocida parisii	4,071,346	2661
Microsporidia	Nosce1	Nosema ceranae	7,860,219	2060
Monoblepharidomycetes	Ganpr1	Gonapodya prolifera	48,794,828	13,902
Mortierellomycotina	Lobtra1	Lobosporangium transversale	42,768,949	11,822
Mortierellomycotina	Morel2	Mortierella elongata	49,863,165	14,969
Mucoromycotina	Absrep1	Absidia repens	47,422,896	14,919
Mucoromycotina	Endsp1	Endogone sp. FLAS 59071	95,552,741	9569
Mucoromycotina	Hesve2	Hesseltinella vesiculosa	27,224,236	11,141
Mucoromycotina	Jimfl_AD_1	Jimgerdemannia flammicorona	231,316,372	13,838
Mucoromycotina	Jimfl_GMNB39_1	Jimgerdemannia flammicorona	239,574,967	13,653
Mucoromycotina	Jimlac1	Jimgerdemannia lactiflua	179,670,541	12,651
Mucoromycotina	Liccor1	Lichtheimia corymbifera	33,525,905	13,404
Mucoromycotina	Mucci2	Mucor circinelloides	36,587,022	11,719
Mucoromycotina	Phybl2	Phycomyces blakesleeanus	53,939,167	16,528
Mucoromycotina	Rhich1	Rhizopus microsporus var. chinensis	45,739,792	17,676
Mucoromycotina	Rhimi_ATCC52814	Rhizopus microsporus var. microsporus	24,950,816	11,502
Mucoromycotina	Rhimi_ATCC11559	Rhizopus microsporus	24,077,254	11,355
Mucoromycotina	Rhimi1_1	Rhizopus microsporus var. microsporus	25,972,395	10,905
Mucoromycotina	Rhior3	Rhizopus delemar	46,087,117	17,467
Mucoromycotina	Synrac1	Syncephalastrum racemosum	121,227,703	11,247
Neocallimastigomycota	Anasp1	Anaeromyces robustus	71,685,009	12,832
Neocallimastigomycota	Neosp1	Neocallimastix californiae	193,032,486	20,219
Neocallimastigomycota	Orpsp1	Orpinomyces sp.	100,954,185	18,936
Neocallimastigomycota	PirE2	Piromyces finnis	56,455,805	10,992
Neocallimastigomycota	Pirfi3	Piromyces sp. E2	71,019,055	14,648
Zoopagomycotina	Pipcy3_1	Piptocephalis cylindrospora	10,748,607	4301
Zoopagomycotina	Synps1	Syncephalis pseudoplumigaleata	16,269,185	6123
Zoopagomycotina	Thasp1	Thamnocephalis sphaerospora	18,203,817	6857

G-code genome code, Assembly assembly length (Mbp), Genes no of genes

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