Skip to main content

Table 2 CAZymes present in the P. purpureum transcriptome and genome

From: Physiological and transcriptome analysis elucidates the metabolic mechanism of versatile Porphyridium purpureum under nitrogen deprivation for exopolysaccharides accumulation

  GHs GTs PLs CEs CBMs AAs
Transcriptome annotation 26 (0, 5, 0, 8) 72 (10, 3, 7, 14) 0 (0, 0, 0, 0) 4 (0, 0, 1, 0) 4 (0, 1, 0, 1) 11 (4, 3, 3, 3)
Genome assembly 31 (5, 5, 3, 8) 83 (8, 5, 4, 17) 0 (0, 0, 0, 0) 2 (0, 0, 1, 0) 40 (3, 4, 2, 4) /
  1. The first and third digits in brackets indicate the number of genes significantly upregulated on the 5th and 15th day of nitrogen deficiency, respectively. The second and fourth digits in brackets indicate the number of significantly downregulated differentially expressed genes on the 5th and 15th day of nitrogen deficiency, respectively
  2. GHs glycoside hydrolases; GTs glycoside transferases; PLs polysaccharide lyases; CEs carbohydrate esterases; CBM carbohydrate-binding modules; AAs auxiliary activities