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Table 2 Diffraction data collection and refinement statistics

From: Identification and structural analysis of a thermophilic β-1,3-glucanase from compost

Variable

X-ray 100 K

Data collection

 Space group

P 212121

 Unit cell dimensions

 

  a, b, c (Å)

60.4, 61.0, 70.7

  α, β, γ (°)

α = β = γ = 90°

 Resolution (Å)

50.00–1.14 (1.16–1.14)

 Unique reflections

95,197 (4703)

 Multiplicity

11.5 (8.3)

 Completeness (%)

100.00 (100.00)

 Wavelength (Å)

0.98

 Rsyma

0.150 (0.942)b

  < I > /σ < I > 

16.6 (2.0)

Refinement

 Resolution (Å)

16.93–1.14 (1.16–1.14)

 Rworkc/Rfreed

0.132/0.158

 No. of atoms

 

  Protein

2221

  Tris

8

  Mg2+

1

  Water molecules

297

 B factors

 

  Protein

12.29

  Solvent

26.84

Deviation from ideality

 Bond length (Å)

0.0136

 Bond angle (°)

1.842

Ramachandran plot statistics (%)

 Preferred regions

97.86

 Allowed regions

2.14

 Outliers

0

PDB ID code

7EO3

  1. aRsym = ∑ (|Ii – < I >|)/∑(I), where Ii is the measured intensity and < I > is the mean intensity of all measured observations equivalent to reflection Ii
  2. bValues in parentheses are statistics from the highest-resolution shell
  3. cRwork = ∑||Fobs| – |Fcalc||/∑|Fobs|, where |Fobs| is the observed diffraction amplitude and |Fcalc| is the corresponding calculated structure factor amplitude
  4. dRfree is defined as Rwork, which involves 5% of the measured reflections not used in refinement and set aside for cross-validation