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Bioresources and Bioprocessing
Fig. 6 | Bioresources and Bioprocessing

Fig. 6

From: Reshaping the binding channel of a novel GH113 family β-mannanase from Paenibacillus cineris (PcMan113) for enhanced activity

Fig. 6

Binding modes and surface representation of the substrate in PcMan113-WT and PcMT3. The structures were obtained from cluster analysis of the MD trajectories during 30 ns of simulation. Surface representation of PcMan113-WT in color cyan (a) and PcMT3 in yellow (b) in complex with substrate mannobiose. The protein–substrate complex cartoon surface representation of PcMan113-WT in color cyan (c) and PcMT3 in yellow (d). The substrate-binding channel surface was shown with red cycles in light yellow shadow (WT) and blue shadow (PcMT3). Site N246 is shown as a yellow surface and light blue sticks ((a) and (c)), site Y246 is shown as a blue surface and sticks ((b) and (d)), site F110 and E110 are shown as a magenta surface and sticks. The substrate is presented as green spheres

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