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Bioresources and Bioprocessing

Table 1 Summary of CAZyme-encoding genes with significantly increased expression in groups

From: Differential transcriptome analysis of Sporocytophaga sp. CX11 and identification of candidate genes involved in lignocellulose degradation

Class

Gene ID

Enzyme description

CAZymes family

log2 fold change  ≥ 1; padj  ≤ 0.01

F vs G_up

C vs G_up

F vs C_up

Cellulases

CX11_GM000268

Beta-glucosidase

GH3

1.02

0.78

 

CX11_GM004302

Beta-glucosidase

GH3

 

1.89

 

CX11_GM002852

Endoglucanase

GH5

3.45

0.74

2.59

CX11_GM004438

Endoglucanase

GH5

3.37

 

3.11

CX11_GM002804

Endoglucanase

GH5

2.92

 

3.58

CX11_GM004508

Endoglucanase

GH5

1.51

1.55

 

CX11_GM003220

Endoglucanase 3

GH5

2.9

 

2.62

CX11_GM001350

Endoglucanase B

GH5

 

2.09

 

CX11_GM000434

Endoglucanase C

GH5

2.11

 

1.98

CX11_GM003239

Endoglucanase 2

GH8

3.58

0.96

2.46

CX11_GM000388

Endoglucanase 2

GH8

2.71

 

2.38

CX11_GM001809

Endoglucanase 2

GH8

2.33

0.41

1.81

CX11_GM005339

Endoglucanase 2

GH8

1.42

1.15

 

CX11_GM000618

Endoglucanase C

GH8

2.65

 

2.51

CX11_GM005080

Endoglucanase A

GH9

1.09

0.48

0.5

CX11_GM000056

Endoglucanase D

GH9

2.34

 

3.23

CX11_GM000079

Beta-glucanase

GH16

1.33

 

1.18

CX11_GM000626

Beta-glucanase

GH16

1.07

 

0.80

Hemicellulases

CX11_GM000042

Bifunctional acetylxylan esterase

CE1

2.62

1.44

1.07

CX11_GM004263

Carbohydrate acetyl esterase/feruloyl esterase

CE1

1.18

 

1

CX11_GM001962

Carbohydrate acetyl esterase/feruloyl esterase

CE6

2.15

1.23

0.81

CX11_GM003964

Carbohydrate acetyl esterase/feruloyl esterase

CE6

2.97

 

1.84

CX11_GM001963

Mannan endo-1,4-beta-mannosidase

GH5

2.92

 

2.51

CX11_GM000038

Reducing-end-xylose releasing exo-oligoxylanase

GH8

2.91

 

2.43

CX11_GM002090

Reducing-end-xylose releasing exo-oligoxylanase

GH8

2.74

 

2.27

CX11_GM000628

Reducing-end-xylose releasing exo-oligoxylanase

GH8

2.60

 

1.68

CX11_GM005472

Xyloglucan-specific endo-beta-1,4-glucanase

GH9

0.92

2.42

 

CX11_GM000081

Endo-1,4-beta-xylanase B

GH10

2.87

1.06

1.69

CX11_GM003219

Endo-1,4-beta-xylanase B

GH10

2.02

0.93

0.97

CX11_GM000047

Endo-1,4-beta-xylanase B

GH10

1.71

1.31

 

CX11_GM000039

Endo-1,4-beta-xylanase 3

GH11

1.38

 

1.04

CX11_GM002851

Endo-1,4-beta-galactosidase

GH16

2.64

 

2.86

CX11_GM004712

Mannan endo-1,4-beta-mannosidase

GH26

3.86

0.79

2.95

CX11_GM000073

Glucuronoxylanase

GH30

1.08

0.71

 

CX11_GM004262

Arabinoxylan arabinofuranohydrolase

GH43

1.87

 

1.27

CX11_GM000043

Xylosidase/arabinosidase

GH43

 

1.35

 

CX11_GM004261

Beta-xylosidase

GH43

1.48

 

1.34

CX11_GM000048

Alpha-l-arabinofuranosidase

GH43

1.19

1.06

 

CX11_GM002260

Xyloglucanase

GH74

3.79

 

3.62

CX11_GM000027

Xyloglucanase

GH74

1.85

1.57

 

CX11_GM000529

Mannosyl transferase

GT83

2.00

 

2.03

Pectinases

CX11_GM001947

Pectinesterase 31

CE8

2.9

 

2.67

CX11_GM003962

Rhamnogalacturonan acetylesterase

CE12

1.56

 

0.99

CX11_GM000527

l-arabinose transferase

GT2

5.8

1.06

4.62

CX11_GM004710

Pectate lyase E

PL1

2.85

2.14

0.6

CX11_GM000632

Pectate trisaccharide-lyase

PL1

2.3

1.11

1.08

CX11_GM000058

Pectate lyase C

PL1

3.23

 

1.57

CX11_GM003503

Pectate lyase C

PL1

2.99

1.55

2.16

CX11_GM003502

Pectate trisaccharide-lyase

PL1

1.96

0.68

1.18

CX11_GM003504

Pectate trisaccharide-lyase

PL1

1.49

  

CX11_GM003956

Rhamnogalacturonan endolyase

PL11

1.58

1.22

 

CX11_GM003955

Rhamnogalacturonan endolyase

PL11

1.07

  

Chitinases

CX11_GM002492

Chitinase

GH18

 

1.52

 

CX11_GM002954

Chitinase

GH18

 

1.02

 
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