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Table 2 Gene expression analysis of C. glutamicum WT in CGXII minimal medium with 50 mM glucose a

From: Engineering of Corynebacterium glutamicum for growth and production of L-ornithine, L-lysine, and lycopene from hexuronic acids

  Gene ID Description M
Differentially expressed genes in the presence of D-glucuronate cg3219 ldh, L-lactate dehydrogenase 1.7
  cg3303 Transcriptional regulator PadR family 1.6
  cg0580 Hypothetical protein 1.5
  cg2789 nrdH, glutaredoxin-like protein NrdH −1.5
  cg2182 ABC-type peptide transport system, permease component −1.5
  cg3300 Cation transport ATPase −1.5
  cg2477 Hypothetical protein −1.6
  cg1809 DNA-directed RNA polymerase subunit omega −1.7
  cg0935 Hypothetical protein −1.8
  cg1286 Hypothetical protein −1.8
Differentially expressed genes in the presence of D-galacturonate cg2313 idhA3, myo-inositol 2-dehydrogenase 2.0
  cg1118 Pyrimidine reductase, riboflavin biosynthesis 1.9
  cg0687 gcp, putative O-sialoglycoprotein endopeptidase 1.9
  cg1116 tdcB, threonine dehydratase 1.9
  cg1784 ocd, putative ornithine cyclodeaminase 1.9
  cg3096 ald, aldehyde dehydrogenase 1.9
  cg0792 Thioredoxin domain-containing protein 1.8
  cg0682 ATPase or kinase 1.7
  cg1003 fthC, 5-formyltetrahydrofolate cycloligase 1.7
  cg1134 pabAB, para-aminobenzoate synthase components I and II 1.7
  cg1438 ABC-type transport system, ATPase component (C-terminal fragment) 1.7
  cg2430 Hypothetical protein 1.7
  cg1560 uvrA, excinuclease ATPase subunit 1.7
  cg1014 pmt, protein O-mannosyltransferase 1.6
  cg1668 Putative membrane protein 1.6
  cg2625 pcaF, β-ketoadipyl CoA thiolase 1.6
  cg2094 Hypothetical protein 1.6
  cg1241 Hypothetical protein 1.5
  cg1876 Glycosyltransferase 1.5
  cg2417 Short-chain-type oxidoreductase 1.5
  cg3118 cysl, ferredoxin-sulfite reductase −1.5
  cg0504 qsuD, shikimate 5-dehydrogenase −1.5
  cg1740 Putative nucleoside-diphosphate-sugar epimerase −1.5
  cg3225 Putative serine/threonine-specific protein phosphatase −1.5
  cg2945 ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase −1.5
  cg1614 Hypothetical protein −1.5
  cg3427 parA1, ATPase involved in chromosome partitioning −1.5
  cg1252 fdxC, ferredoxin −1.5
  cg0518 hemL, glutamate-1-semialdehyde 2,1-aminomutase −1.5
  cg2587 Phosphoglycerate dehydrogenase or related dehydrogenase −1.6
  cg1551 uspA1, universal stress protein UspA −1.6
  cg0059 pknA, serine/threonine protein kinase −1.7
  cg0156 cysR, transcriptional activator of assimilatory sulfate reduction −1.7
  cg0966 thyA, thymidylate synthase −1.7
  cg0060 pbpA, D-alanyl-D-alanine carboxypeptidase −1.7
  cg1045 Hypothetical protein −1.7
  cg3119 fpr2, probable sulfite reductase (flavoprotein) −1.8
  cg1253 Succinyldiaminopimelate aminotransferase −1.8
  cg0045 Putative ABC-type transporter membrane protein −1.8
  cg3117 cysX, ferredoxin-like protein −1.8
  cg3430 Hypothetical protein −1.9
  cg3115 cysD, sulfate adenylyltransferase subunit 2 −1.9
  cg1037 rfp2, RPF2 precursor −1.9
  1. aStatistical evaluation was carried out with the t-test, where p ≤ 0.05, log expression ratio M ≥ 1.5 or ≤ −1.5, and signal intensity A ≥ 10. Values are averages of three independent cultivations.