Andrews SC, Robinson AK, Rodríguez-Quiñones F (2003) Bacterial iron homeostasis. FEMS Microbiol Rev 27:215–237
Article
CAS
PubMed
Google Scholar
Aristidou A, Penttilä M (2000) Metabolic engineering applications to renewable resource utilization. Cur Opin Biotechnol 11:187–198
Article
CAS
Google Scholar
Aulenta F, Reale P, Catervi A, Panero S, Reale P, Rossetti S (2008) Kinetics of trichloroethene dechlorination and methane formation by a mixed anaerobic culture in a bio-electrochemical system. Electrochim Acta 53:5300–5305
Article
CAS
Google Scholar
Bond DR, Lovley DR (2003) Electricity production by Geobacter sulfurreducens attached to electrodes. Appl Environ Microbiol 69:1548–1555
Article
CAS
PubMed
PubMed Central
Google Scholar
Borole AP, Reguera G, Ringeisen B, Wang ZW, Feng Y, Kim BH (2011) Electroactive biofilms: current status and future research needs. Energy Environ Sci 4:4813–4834
Article
CAS
Google Scholar
Botsford JL, Harman JG (1992) Cyclic AMP in prokaryotes. Microbiol Rev 56:100–122
CAS
PubMed
PubMed Central
Google Scholar
Bretschger O, Obraztsova A, Sturm CA, Chang IS, Gorby YA, Reed SB, Culley DE, Reardon CL, Barua S, Romine MF, Zhou J, Beliaev AS, Bouhenni R, Saffarini D, Mansfeld F, Kim BH, Fredrickson JK, Nealson KH (2007) Current production and metal oxide reduction by Shewanella oneidensis MR-1wild type and mutants. Appl Environ Microbiol 73:7003–7012
Article
CAS
PubMed
PubMed Central
Google Scholar
Brutinel ED, Gralnick JA (2012) Preferential utilization of d-Lactate by Shewanella oneidensis. Appl Environ Microbiol 78:8474–8476
Article
CAS
PubMed
PubMed Central
Google Scholar
Bursac T, Gralnick JA, Gescher J (2017) Acetoin production via unbalanced fermentation in Shewanella oneidensis. Biotechnol Bioeng 114:1283–1289
Article
CAS
PubMed
Google Scholar
Caccavo F, Lonergan DJ, Lovley DR, Davis M, Stolz JF, McInerney MJ (1994) Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism. Appl Environ Microbiol 60:3752–3759
CAS
PubMed
PubMed Central
Google Scholar
Chang IS, Moon H, Bretschger O, Jang JK, Park HI, Nealson KH, Kim BH (2006) Electrochemically active bacteria (EAB) and mediator-less microbial fuel cells. J Microbiol Biotechnol 16:163–177
CAS
Google Scholar
Chao L, Rakshe S, Leff M, Spormann AM (2013) PdeB, a cyclic di-GMP-specific phosphodiesterase that regulates Shewanella oneidensis MR-1 motility and biofilm formation. J Bacteriol 195:3827–3833
Article
CAS
PubMed
PubMed Central
Google Scholar
Charania MA, Brockman KL, Zhang Y, Banerjee A, Pinchuk GE, Fredrickson JK, Beliaev AS, Saffarini DA (2009) Involvement of a membrane-bound class III adenylate cyclase in regulation of anaerobic respiration in Shewanella oneidensis MR-1. J Bacteriol 191:4298–4306
Article
CAS
PubMed
PubMed Central
Google Scholar
Cheng YY, Wu C, Wu JY, Jia HL, Wang MY, Wang HY, Zou SM, Sun RR, Jia R, Xiao YZ (2017) FlrA represses transcription of the biofilm-associated bpfA operon in Shewanella putrefaciens. Appl Environ Microbiol 83:e02410–16
Article
PubMed
PubMed Central
Google Scholar
Choi D, Lee SB, Kim S, Min B, Choi IG, Chang IS (2014) Metabolically engineered glucose-utilizing Shewanella strains under anaerobic conditions. Bioresour Technol 154:59–66
Article
CAS
PubMed
Google Scholar
Choi S, Kim B, Chang IS (2018) Tracking of Shewanella oneidensis MR-1 biofilm formation of a microbial electrochemical system via differential pulse voltammetry. Bioresour Technol 254:357–361
Article
CAS
PubMed
Google Scholar
Christen M, Christen B, Folcher M, Schauerte A, Jenal U (2005) Identification and characterization of a cyclic di-GMP-specific phosphodiesterase and its allosteric control by GTP. J Biol Chem 280:30829–30837
Article
CAS
PubMed
Google Scholar
Chubiz LM, Marx CJ (2017) Growth trade-offs accompany the emergence of glycolytic metabolism in Shewanella oneidensis MR-1. J Bacteriol 199:e00827-16
Article
PubMed
PubMed Central
Google Scholar
Crack J, Green J, Thomson AJ (2004) Mechanism of oxygen sensing by the bacterial transcription factor fumarate–nitrate reduction (FNR). J Biol Chem 279:9278–9286
Article
CAS
PubMed
Google Scholar
Crain AV, Broderick JB (2014) Pyruvate formate-lyase and its activation by pyruvate formate-lyase activating enzyme. J Biol Chem 289:5723–5729
Article
CAS
PubMed
Google Scholar
Croese E, Jeremiasse AW, Marshall IP, Spormann AM, Euverink GJ, Geelhoed JS, Stams AJ, Plugge CM (2014) Influence of setup and carbon source on the bacterial community of biocathodes in microbial electrolysis cells. Enzyme Microb Technol 61:67–75
Article
PubMed
CAS
Google Scholar
Cruz-García C, Murray AE, Rodrigues JL, Gralnick JA, McCue LA, Romine MF, Löffler FE, Tiedje JM (2011) Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism in Shewanella oneidensis MR-1. BMC Microbiol 11:64
Article
PubMed
PubMed Central
CAS
Google Scholar
Das D, Veziroglu TN (2008) Advances in biological hydrogen production processes. Int J Hydrog Energy 33:6046–6057
Article
CAS
Google Scholar
De Lorenzo V, Wee S, Herrero M, Neilands JB (1987) Operator sequences of the aerobactin operon of plasmid ColV-K30 binding the ferric uptake regulation (fur) repressor. J Bacteriol 169:2624–2630
Article
PubMed
PubMed Central
Google Scholar
De Vriendt K, Theunissen S, Carpentier W, De Smet L, Devreese B, Van Beeumen J (2005) Proteomics of Shewanella oneidensis MR-1 biofilm reveals differentially expressed proteins, including AggA and RibB. Proteomics 5:1308–1316
Article
PubMed
CAS
Google Scholar
Doyle LE, Marsili E (2015) Methods for enrichment of novel electrochemically-active microorganisms. Bioresour Technol 195:273–282
Article
CAS
PubMed
Google Scholar
Drake HL, Gößner AS, Daniel SL (2008) Old acetogens, new light. Ann N Y Acad Sci 1125:100–128
Article
CAS
PubMed
Google Scholar
Duhl KL, Tefft NM, TerAvest MA (2018) Shewanella oneidensis MR-1 utilizes both sodium- and proton-pumping NADH dehydrogenases during aerobic growth. Appl Environ Microbiol 84:e00415-18
Article
PubMed
PubMed Central
Google Scholar
Firer-Sherwood M, Pulcu GS, Elliott SJ (2008) Electrochemical interrogations of the Mtr cytochromes from Shewanella: opening a potential window. J Biol Inorg Chem 13:849–854
Article
CAS
PubMed
Google Scholar
Flynn JM, Ross DE, Hunt KA, Bond DR, Gralnick JA (2010) Enabling unbalanced fermentations by using engineered electrode-interfaced bacteria. MBio 1:e00190-10
Article
PubMed
PubMed Central
CAS
Google Scholar
Fredrickson JK, Romine MF, Beliaev AS, Auchtung JM, Driscoll ME, Gardner TS, Nealson KH, Osterman AL, Pinchuk G, Reed JL, Rodionov DA, Rodrigues JL, Saffarini DA, Serres MH, Spormann AM, Zhulin IB, Tiedje JM (2008) Towards environmental systems biology of Shewanella. Nat Rev Microbiol 6:592–603
Article
CAS
PubMed
Google Scholar
Gancedo JM (2013) Biological roles of cAMP: variations on a theme in the different kingdoms of life. Biol Rev Camb Philos Soc 88:645–668
Article
PubMed
Google Scholar
Gao H, Wang X, Yang ZK, Palzkill T, Zhou J (2008) Probing regulon of ArcA in Shewanella oneidensis MR-1 by integrated genomic analyses. BMC Genom 9:42
Article
CAS
Google Scholar
Gao H, Wang X, Yang ZK, Chen J, Liang Y, Chen H, Palzkill T, Zhou J (2010) Physiological roles of ArcA, Crp, and EtrA and their interactive control on aerobic and anaerobic respiration in Shewanella oneidensis. PLoS ONE 5:e15295
Article
CAS
PubMed
PubMed Central
Google Scholar
Georgellis D, Kwon O, Lin EC (2001) Quinones as the redox signal for the arc two-component system of bacteria. Science 292:2314–2316
Article
CAS
PubMed
Google Scholar
Gödeke J, Paul K, Lassak J, Thormann KM (2011) Phage-induced lysis enhances biofilm formation in Shewanella oneidensis MR-1. ISME J 5:613–626
Article
PubMed
CAS
Google Scholar
Gorby Y, Mclean J, Korenevsky A, Rosso K, El-Naggar MY, Beveridge TJ (2008) Redox-reactive membrane vesicles produced by Shewanella. Geobiology 6:232–241
Article
CAS
PubMed
Google Scholar
Griggs DW, Konisky J (1989) Mechanism for iron-regulated transcription of the Escherichia coli cir gene: metal-dependent binding of Fur protein to the promoters. J Bacteriol 171:1048–1054
Article
CAS
PubMed
PubMed Central
Google Scholar
Grobbler C, Virdis B, Nouwens A, Harnisch F, Rabaey K, Bond PL (2015) Use of SWATH mass spectrometry for quantitative proteomic investigation of Shewanella oneidensis MR-1 biofilms grown on graphite cloth electrodes. Syst Appl Microbiol 38:135–139
Article
CAS
PubMed
Google Scholar
Gunsalus RP, Park SJ (1994) Aerobic-anaerobic gene regulation in Escherichia coli: control by the ArcAB and Fnr regulons. Res Microbiol 145:437–450
Article
CAS
PubMed
Google Scholar
Heidelberg JF, Paulsen IT, Nelson KE, Gaidos EJ, Nelson WC, Read TD, Eisen JA, Seshadri R, Ward N, Methe B, Clayton RA, Meyer T, Tsapin A, Scott J, Beanan M, Brinkac L, Daugherty S, DeBoy RT, Dodson RJ, Durkin AS, Haft DH, Kolonay JF, Madupu R, Peterson JD, Umayam LA, White O, Wolf AM, Vamathevan J, Weidman J, Impraim M, Lee K, Berry K, Lee C, Mueller J, Khouri H, Gill J, Utterback TR, McDonald LA, Feldblyum TV, Smith HO, Venter JC, Nealson KH, Fraser CM (2002) Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis. Nat Biotechnol 20:1118–1123
Article
CAS
PubMed
Google Scholar
Hengge R, Gründling A, Jenal U, Ryan R, Yildiz F (2016) Bacterial signal transduction by cyclic di-GMP and other nucleotide second messengers. J Bacteriol 198:15–26
Article
CAS
PubMed
Google Scholar
Hickman JW, Harwood CS (2008) Identification of FleQ from Pseudomonas aeruginosa as a c-di-GMP-responsive transcription factor. Mol Microbiol 69:376–389
Article
CAS
PubMed
PubMed Central
Google Scholar
Hirose A, Kasai T, Aoki M, Umemura T, Watanabe K, Kouzuma A (2018) Electrochemically active bacteria sense electrode potentials for regulating catabolic pathways. Nat Commun 9:1083
Article
PubMed
PubMed Central
CAS
Google Scholar
Hollands K, Busby SJW, Lloyd GS (2007) New targets for the cyclic AMP receptor protein in the Escherichia coli K-12 genome. FEMS Microbiol Lett 274:89–94
Article
CAS
PubMed
Google Scholar
Howard EC, Hamdan LJ, Lizewski SE, Ringeisen BR (2012) High frequency of glucose-utilizing mutants in Shewanella oneidensis MR-1. FEMS Microbiol Lett 327:9–14
Article
CAS
PubMed
Google Scholar
Hunt KA, Flynn JM, Naranjo B, Shikhare ID, Gralnick JA (2010) Substrate-level phosphorylation is the primary source of energy conservation during anaerobic respiration of Shewanella oneidensis strain MR-1. J Bacteriol 192:3345–3351
Article
CAS
PubMed
PubMed Central
Google Scholar
Iuchi S, Lin EC (1988) arcA, a global regulatory gene in Escherichia coli mediating repression of enzymes in aerobic pathways. Proc Natl Acad Sci USA 85:1888–1892
Article
CAS
PubMed
Google Scholar
Jenal U, Reinders A, Lori C (2017) Cyclic di-GMP: second messenger extraordinaire. Nat Rev Microbiol 15:271–284
Article
CAS
PubMed
Google Scholar
Jeon JM, Park H, Seo HM, Kim JH, Bhatia SK, Sathiyanarayanan G, Song HS, Park SH, Choi KY, Sang BI, Yang YH (2015) Isobutanol production from an engineered Shewanella oneidensis MR-1. Bioprocess Biosyst Eng 38:2147–2154
Article
CAS
PubMed
Google Scholar
Jeon JM, Song HS, Lee DG, Hong JW, Hong YG, Moon YM, Bhatia SK, Yoon JJ, Kim W, Yang YH (2018) Butyrate-based n-butanol production from an engineered Shewanella oneidensis MR-1. Bioprocess Biosyst Eng 41:1195–1204
Article
CAS
PubMed
Google Scholar
Jormakka M, Törnroth S, Byrne B, Iwata S (2002) Molecular basis of proton motive force generation: structure of formate dehydrogenase-N. Science 295:1863–1868
Article
PubMed
Google Scholar
Kane AL, Brutinel ED, Joo H, Maysonet R, VanDrisse CM, Kotloski NJ, Gralnick JA (2016) Formate metabolism in Shewanella oneidensis generates proton motive force and prevents growth without an electron acceptor. J Bacteriol 198:1337–1346
Article
CAS
PubMed
PubMed Central
Google Scholar
Kasai T, Kouzuma A, Nojiri H, Watanabe K (2015) Transcriptional mechanisms for differential expression of outer membrane cytochrome genes omcA and mtrC in Shewanella oneidensis MR-1. BMC Microbiol 15:68
Article
PubMed
PubMed Central
CAS
Google Scholar
Kasai T, Kouzuma A, Watanabe K (2017) CRP regulates d-lactate oxidation in Shewanella oneidensis MR-1. Front Microbiol 8:869
Article
PubMed
PubMed Central
Google Scholar
Kasai T, Kouzuma A, Watanabe K (2018) CpdA is involved in amino acid metabolism in Shewanella oneidensis MR-1. Biosci Biotechnol Biochem 82:166–172
Article
CAS
PubMed
Google Scholar
Kato S, Hashimoto K, Watanabe K (2013) Iron-oxide minerals affect extracellular electron-transfer paths of Geobacter spp. Microbes Environ 28:141–148
Article
PubMed
PubMed Central
Google Scholar
Kim BH, Kim HJ, Hyun MS, Park DH (1999) Direct electrode reaction of Fe(III)-reducing bacterium, Shewanella putrefaciens. J Microbiol Biotechnol 9:127–131
Google Scholar
Kitayama M, Koga R, Kasai T, Kouzuma A, Watanabe K (2017) Structures, compositions, and activities of live Shewanella biofilms formed on graphite electrodes in electrochemical flow cells. Appl Environ Microbiol 83:166–172
Article
Google Scholar
Knappe J, Neugebauer FA, Blaschkowski HP, Gänzler M (1984) Post-translational activation introduces a free radical into pyruvate formate-lyase. Proc Natl Acad Sci USA 81:1332–1335
Article
CAS
PubMed
Google Scholar
Kokko ME, Mäkinen AE, Puhakka JA (2016) Anaerobes in bioelectrochemical systems. Adv Biochem Eng Biotechnol 156:263–292
CAS
PubMed
Google Scholar
Kouzuma A, Meng XY, Kimura N, Hashimoto K, Watanabe K (2010) Disruption of the putative cell surface polysaccharide biosynthesis gene SO3177 in Shewanella oneidensis MR-1 enhances adhesion to electrodes and current generation in microbial fuel cells. Appl Environ Microbiol 76:4151–4157
Article
CAS
PubMed
PubMed Central
Google Scholar
Kouzuma A, Hashimoto K, Watanabe K (2012a) Influences of aerobic respiration on current generation by Shewanella oneidensis MR-1 in single-chamber microbial fuel cells. Biosci Biotechnol Biochem 76:270–275
Article
CAS
PubMed
Google Scholar
Kouzuma A, Hashimoto K, Watanabe K (2012b) Roles of siderophore in manganese-oxide reduction by Shewanella oneidensis MR-1. FEMS Microbiol Lett 326:91–98
Article
CAS
PubMed
Google Scholar
Kouzuma A, Kasai T, Hirose A, Watanabe K (2015) Catabolic and regulatory systems in Shewanella oneidensis MR-1 involved in electricity generation in microbial fuel cells. Front Microbiol 6:609
PubMed
PubMed Central
Google Scholar
Kouzuma A, Ishii S, Watanabe K (2018) Metagenomic insights into the ecology and physiology of microbes in bioelectrochemical systems. Bioresour Technol 255:302–307
Article
CAS
PubMed
Google Scholar
Kracke F, Lai B, Yu S, Krömer JO (2018) Balancing cellular redox metabolism in microbial electrosynthesis and electro fermentation—a chance for metabolic engineering. Metab Eng 45:109–120
Article
CAS
PubMed
Google Scholar
Kreuzer HW, Hill EA, Moran JJ, Bartholomew RA, Yang H, Hegg EL (2014) Contributions of the [NiFe]- and [FeFe]-hydrogenase to H2 production in Shewanella oneidensis MR-1 as revealed by isotope ratio analysis of evolved H2. FEMS Microbiol Lett 352:18–24
Article
CAS
PubMed
Google Scholar
Lassak J, Henche A-L, Binnenkade L, Thormann KM (2010) ArcS, the cognate sensor kinase in an atypical Arc system of Shewanella oneidensis MR-1. Appl Environ Microbiol 76:3263–3274
Article
CAS
PubMed
PubMed Central
Google Scholar
Lassak J, Bubendorfer S, Thormann KM (2013) Domain analysis of ArcS, the hybrid sensor kinase of the Shewanella oneidensis MR-1 Arc two-component system, reveals functional differentiation of its two receiver domains. J Bacteriol 195:482–492
Article
CAS
PubMed
PubMed Central
Google Scholar
Le Laz S, Kpebe A, Lorquin J, Brugna M, Rousset M (2014) H2-dependent azoreduction by Shewanella oneidensis MR-1: involvement of secreted flavins and both [Ni–Fe] and [Fe–Fe] hydrogenases. Appl Microbiol Biotechnol 98:2699–2707
Article
PubMed
CAS
Google Scholar
Lefebvre O, Uzabiaga A, Chang IS, Kim BH, Ng HY (2011) Microbial fuel cells for energy self-sufficient domestic wastewater treatment-a review and discussion from energetic consideration. Appl Microbiol Biotechnol 89:259–270
Article
CAS
PubMed
Google Scholar
Li F, Li Y, Sun L, Li X, Yin C, An X, Chen X, Tian Y, Song H (2017a) Engineering Shewanella oneidensis enables xylose-fed microbial fuel cell. Biotechnol Biofuels 10:1–10
Article
PubMed
PubMed Central
CAS
Google Scholar
Li SW, Zeng RJ, Sheng GP (2017b) An excellent anaerobic respiration mode for chitin degradation by Shewanella oneidensis MR-1 in microbial fuel cells. Biochem Eng J 118:20–24
Article
CAS
Google Scholar
Li F, Li Y, Sun L, Chen X, An X, Yin C, Cao Y, Wu H, Song H (2018a) Modular engineering intracellular NADH regeneration boosts extracellular electron transfer of Shewanella oneidensis MR-1. ACS Synth Biol 7:885–895
Article
CAS
PubMed
Google Scholar
Li M, Zhou M, Tian X, Tan C, McDaniel CT, Hassett DJ, Gu T (2018b) Microbial fuel cell (MFC) power performance improvement through enhanced microbial electrogenicity. Biotechnol Adv 36:1316–1327
Article
CAS
PubMed
Google Scholar
Liu C, Gorby YA, Zachara JM, Fredrickson JK, Brown CF (2002) Reduction kinetics of Fe(III), Co(III), U(VI), Cr(VI), and Tc(VII) in cultures of dissimilatory metal-reducing bacteria. Biotechnol Bioeng 80:637–649
Article
CAS
PubMed
Google Scholar
Liu CG, Xue C, Lin YH, Bai FW (2013) Redox potential control and applications in microaerobic and anaerobic fermentations. Biotechnol Adv 31:257–265
Article
CAS
PubMed
Google Scholar
Logan BE, Hamelers B, Rozendal R, Schröder U, Keller J, Freguia S, Aelterman P, Verstraete W, Rabaey K (2006) Microbial fuel cells: methodology and technology. Environ Sci Technol 40:5181–5192
Article
CAS
PubMed
Google Scholar
Lovley DR (2012) Electromicrobiology. Annu Rev Microbiol 66:391–409
Article
CAS
PubMed
Google Scholar
Lu M, Chan S, Babanova S, Bretschger O (2017) Effect of oxygen on the per-cell extracellular electron transfer rate of Shewanella oneidensis MR-1 explored in bioelectrochemical systems. Biotechnol Bioeng 11:96–105
Article
CAS
Google Scholar
Luo S, Guo W, Nealson KH, Feng X, He Z (2016) 13C pathway analysis for the role of formate in electricity generation by Shewanella oneidensis MR-1 using lactate in microbial fuel cells. Sci Rep 6:1–8
Article
CAS
Google Scholar
Marritt SJ, McMillan DG, Shi L, Fredrickson JK, Zachara JM, Richardson DJ, Jeuken LJ, Butt JN (2012) The roles of CymA in support of the respiratory flexibility of Shewanella oneidensis MR-1. Biochem Soc Trans 40:1217–1221
Article
CAS
PubMed
Google Scholar
Marsili E, Baron DB, Shikhare ID, Coursolle D, Gralnick JA, Bond DR (2008) Shewanella secretes flavins that mediate extracellular electron transfer. Proc Natl Acad Sci USA 105:3968–3973
Article
CAS
PubMed
Google Scholar
McDowall JS, Murphy BJ, Haumann M, Palmer T, Armstrong FA, Sargent F (2014) Bacterial formate hydrogenlyase complex. Proc Natl Acad Sci USA 111:3948–3956
Article
CAS
Google Scholar
Melo AMP, Bandeiras TM, Teixeira M (2004) New insights into type II NAD(P)H: quinone oxidoreductases. Microbiol Mol Biol Rev 68:603–616
Article
CAS
PubMed
PubMed Central
Google Scholar
Meshulam-Simon G, Behrens S, Choo AD, Spormann AM (2007) Hydrogen metabolism in Shewanella oneidensis MR-1. Appl Environ Microbiol 73:1153–1165
Article
CAS
PubMed
Google Scholar
Moore LJ, Mettert EL, Kiley PJ (2006) Regulation of FNR dimerization by subunit charge repulsion. J Biol Chem 281:33268–33275
Article
CAS
PubMed
Google Scholar
Mordkovich NN, Voeĭkova TA, Novikova TA, Smirnov IA, Il’in VK, Soldatov PE, Tiurin-Kuz’min AI, Smolenskaia TS, Veĭko VP, Shakulov RS, Debabov VG (2013) Influence of NAD-dependent formate dehydrogenase on anaerobic respiration of Shewanella oneidensis MR-1. Mikrobiologiia 82:395–401
CAS
PubMed
Google Scholar
Moscoviz R, Toledo-Alarcón J, Trably E, Bernet N (2016) Electro-fermentation: how to drive fermentation using electrochemical systems. Trends Biotechnol 34:856–865
Article
CAS
PubMed
Google Scholar
Myers CR, Nealson KH (1988) Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptor. Science 240:1319–1321
Article
CAS
PubMed
Google Scholar
Naik SN, Goud VV, Rout PK, Dalai AK (2010) Production of first and second generation biofuels: a comprehensive review. Renew Sustain Energy Rev 14:578–597
Article
CAS
Google Scholar
Nakagawa G, Kouzuma A, Hirose A, Kasai T, Yoshida G, Watanabe K (2015) Metabolic characteristics of a glucose-utilizing Shewanella oneidensis strain grown under electrode-respiring conditions. PLoS ONE 10:e0138813
Article
PubMed
PubMed Central
CAS
Google Scholar
Nevin KP, Woodard TL, Franks AE, Summers ZM, Lovley DR (2010) Microbial electrosynthesis: feeding microbes electricity to convert carbon dioxide and water to multicarbon extracellular organic compounds. MBio 1:1–4
Article
CAS
Google Scholar
Newman DK, Kolter R (2000) A role for excreted quinones in extracellular electron transfer. Nature 405:94–97
Article
CAS
PubMed
Google Scholar
Newton GJ, Mori S, Nakamura R, Hashimoto K, Watanabe K (2009) Analyses of current-generating mechanisms of Shewanella loihica PV-4 and Shewanella oneidensis MR-1 in microbial fuel cells. Appl Environ Microbiol 75:7674–7681
Article
CAS
PubMed
PubMed Central
Google Scholar
Orr MW, Donaldson GP, Severin GB, Wang J, Sintim HO, Waters CM, Lee VT (2015) Oligoribonuclease is the primary degradative enzyme for pGpG in Pseudomonas aeruginosa that is required for cyclic-di-GMP turnover. Proc Natl Acad Sci USA 112:5048–5057
Article
CAS
Google Scholar
Paul R, Weiser S, Amiot NC, Chan C, Schirmer T, Giese B, Jenal U (2004) Cell cycle-dependent dynamic localization of a bacterial response regulator with a novel di-guanylate cyclase output domain. Genes Dev 18:715–727
Article
CAS
PubMed
PubMed Central
Google Scholar
Pinchuk GE, Rodionov DA, Yang C, Li X, Osterman AL, Dervyn E, Geydebrekht OV, Reed SB, Romine MF, Collart FR, Scott JH, Fredrickson JK, Beliaev AS (2009) Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals a previously uncharacterized machinery for lactate utilization. Proc Natl Acad Sci USA 106:2874–2879
Article
CAS
PubMed
Google Scholar
Pinchuk GE, Geydebrekht OV, Hill EA, Reed JL, Konopka AE, Beliaev AS, Fredrickson JK (2011) Pyruvate and lactate metabolism by Shewanella oneidensis MR-1 under fermentation, oxygen limitation, and fumarate respiration conditions. Appl Environ Microbiol 77:8234–8240
Article
CAS
PubMed
PubMed Central
Google Scholar
Pirbadian S, Barchinger SE, Leung KM, Byun HS, Jangir Y, Bouhenni RA, Reed SB, Romine MF, Saffarini DA, Shi L, Gorby YA, Golbeck JH, El-Naggar MY (2014) Shewanella oneidensis MR-1 nanowires are outer membrane and periplasmic extensions of the extracellular electron transport components. Proc Natl Acad Sci USA 111:12883–12888
Article
CAS
PubMed
Google Scholar
Rabaey K, Rozendal RA (2010) Microbial electrosynthesis—revisiting the electrical route for microbial production. Nat Rev Microbiol 8:706–716
Article
CAS
PubMed
Google Scholar
Redwood MD, Mikheenko IP, Sargent F, Macaskie LE (2008) Dissecting the roles of Escherichia coli hydrogenases in biohydrogen production. FEMS Microbiol Lett 278:48–55
Article
CAS
PubMed
Google Scholar
Rodionov DA, Novichkov PS, Stavrovskaya ED, Rodionova IA, Li X, Kazanov MD, Ravcheev DA, Gerasimova AV, Kazakov AE, Kovaleva GY, Permina EA, Laikova ON, Overbeek R, Romine MF, Fredrickson JK, Arkin AP, Dubchak I, Osterman AL, Gelfand MS (2011) Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus. BMC Genom 12(Suppl 1):S3
Article
CAS
Google Scholar
Ross DE, Flynn JM, Baron DB, Gralnick JA, Bond DR (2011) Towards electrosynthesis in Shewanella: energetics of reversing the mtr pathway for reductive metabolism. PLoS ONE 6:e16649
Article
CAS
PubMed
PubMed Central
Google Scholar
Rowe AR, Rajeev P, Jain A, Pirbadian S, Okamoto A, Gralnick JA, El-Naggar MY, Nealson KH (2018) Tracking electron uptake from a cathode into Shewanella cells: implications for energy acquisition from solid-substrate electron donors. MBio 9:1–19
Article
Google Scholar
Ryan RP, Fouhy Y, Lucey JF, Crossman LC, Spiro S, He YW, Zhang LH, Heeb S, Cámara M, Williams P, Dow JM (2006) Cell-cell signaling in Xanthomonas campestris involves an HD-GYP domain protein that functions in cyclic di-GMP turnover. Proc Natl Acad Sci USA 103:6712–6717
Article
CAS
PubMed
Google Scholar
Saffarini DA, Schultz R, Beliaev A (2003) Involvement of cyclic AMP (cAMP) and cAMP receptor protein in anaerobic respiration of Shewanella oneidensis. J Bacteriol 185:3668–3671
Article
CAS
PubMed
PubMed Central
Google Scholar
Santoro C, Arbizzani C, Erable B, Ieropoulos I (2017) Microbial fuel cells: from fundamentals to applications. A review. J Power Sources 356:225–244
Article
CAS
PubMed
PubMed Central
Google Scholar
Scheller HV (2017) Plant cell wall: never too much acetate. Nat Plants 3:17024
Article
PubMed
Google Scholar
Schröder U, Harnisch F, Angenent LT (2015) Microbial electrochemistry and technology: terminology and classification. Energy Environ Sci 8:513–519
Article
CAS
Google Scholar
Schwechheimer C, Kuehn MJ (2015) Outer-membrane vesicles from Gram-negative bacteria: biogenesis and functions. Nat Rev Microbiol 13:605–619
Article
CAS
PubMed
PubMed Central
Google Scholar
Sekar R, Shin HD, DiChristina TJ (2016) Activation of an otherwise silent xylose metabolic pathway in Shewanella oneidensis. Appl Environ Microbiol 82:3996–4005
Article
CAS
PubMed
PubMed Central
Google Scholar
Shi L, Squier TC, Zachara JM, Fredrickson JK (2007) Respiration of metal (hydr)oxides by Shewanella and Geobacter: a key role for multihaem c-type cytochromes. Mol Microbiol 65:12–20
Article
CAS
PubMed
PubMed Central
Google Scholar
Shi L, Dong H, Reguera G, Beyenal H, Lu A, Liu J, Yu HQ, Fredrickson JK (2016) Extracellular electron transfer mechanisms between microorganisms and minerals. Nat Rev Microbiol 14:651–662
Article
CAS
PubMed
Google Scholar
Shimada T, Fujita N, Yamamoto K, Ishihama A (2011) Novel roles of cAMP receptor protein (CRP) in regulation of transport and metabolism of carbon sources. PLoS One 6:e20081
Article
CAS
PubMed
PubMed Central
Google Scholar
Stoeckl M, Schlegel C, Sydow A, Holtmann D, Ulber R, Mangold KM (2016) Membrane separated flow cell for parallelized electrochemical impedance spectroscopy and confocal laser scanning microscopy to characterize electro-active microorganisms. Electrochim Acta 220:444–452
Article
CAS
Google Scholar
Sturm G, Richter K, Doetsch A, Heide H, Louro RO, Gescher J (2015) A dynamic periplasmic electron transfer network enables respiratory flexibility beyond a thermodynamic regulatory regime. ISME J 9:1802–1811
Article
PubMed
PubMed Central
CAS
Google Scholar
Sydow A, Krieg T, Mayer F, Schrader J, Holtmann D (2014) Electroactive bacteria—molecular mechanisms and genetic tools. Appl Microbiol Biotechnol 98:8481–8895
Article
CAS
PubMed
Google Scholar
Szeinbaum N, Lin H, Brandes JA, Taillefert M, Glass JB, DiChristina TJ (2017) Microbial manganese(III) reduction fuelled by anaerobic acetate oxidation. Environ Microbiol 19:3475–3486
Article
CAS
PubMed
PubMed Central
Google Scholar
Tang YJ, Hwang JS, Wemmer DE, Keasling JD (2007) Shewanella oneidensis MR-1 fluxome under various oxygen conditions. Appl Environ Microbiol 73:718–729
Article
CAS
PubMed
Google Scholar
Thormann KM, Saville RM, Shukla S, Pelletier DA, Spormann AM (2004) Initial phases of biofilm formation in Shewanella oneidensis MR-1. J Bacteriol 186:8096–8104
Article
CAS
PubMed
PubMed Central
Google Scholar
Thormann KM, Saville RM, Shukla S, Spormann AM (2005) Induction of rapid detachment in Shewanella oneidensis MR-1 biofilms. J Bacteriol 187:1014–1021
Article
CAS
PubMed
PubMed Central
Google Scholar
Thormann KM, Duttler S, Saville RM, Hyodo M, Shukla S, Hayakawa Y, Spormann AM (2006) Control of formation and cellular detachment from Shewanella oneidensis MR-1 biofilms by cyclic di-GMP. J Bacteriol 188:2681–2691
Article
CAS
PubMed
PubMed Central
Google Scholar
Torella JP, Gagliardi CJ, Chen JS, Bediako DK, Colón B, Way JC, Silver PA, Nocera DG (2015) Efficient solar-to-fuels production from a hybrid microbial water-splitting catalyst system. Proc Natl Acad Sci USA 112:2337–2342
Article
CAS
PubMed
Google Scholar
Ueoka N, Kouzuma A, Watanabe K (2018) Electrode plate-culture methods for colony isolation of exoelectrogens from anode microbiomes. Bioelectrochemistry 124:1–6
Article
CAS
PubMed
Google Scholar
Venkateswaran K, Moser DP, Dollhopf ME, Lies DP, Saffarini DA, MacGregor BJ, Ringelberg DB, White DC, Nishijima M, Sano H, Burghardt J, Stackebrandt E, Nealson KH (1999) Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov. Int J Syst Bacteriol 49:705–724
Article
CAS
PubMed
Google Scholar
Wan XF, Verberkmoes NC, McCue LA, Stanek D, Connelly H, Hauser LJ, Wu L, Liu X, Yan T, Leaphart A, Hettich RL, Zhou J, Thompson DK (2004) Transcriptomic and proteomic characterization of the Fur modulon in the metal-reducing bacterium Shewanella oneidensis. J Bacteriol 186:8385–8400
Article
CAS
PubMed
PubMed Central
Google Scholar
Wang CC, Chang CW, Chu CP, Lee DJ, Chang BV, Liao CS (2003) Producing hydrogen from wastewater sludge by Clostridium bifermentans. J Biotechnol 102:83–92
Article
CAS
PubMed
Google Scholar
Watanabe K (2008) Recent developments in microbial fuel cell technologies for sustainable bioenergy. J Biosci Bioeng 106:528–536
Article
CAS
PubMed
Google Scholar
Xiao Y, Zhang E, Zhang J, Dai Y, Yang Z, Christensen HEM, Ulstrup J, Zhao F (2017) Extracellular polymeric substances are transient media for microbial extracellular electron transfer. Sci Adv 3:e1700623
Article
PubMed
PubMed Central
CAS
Google Scholar
Yang C, Rodionov DA, Li X, Laikova ON, Gelfand MS, Zagnitko OP, Romine MF, Obraztsova AY, Nealson KH, Osterman AL (2006) Comparative genomics and experimental characterization of N-acetylglucosamine utilization pathway of Shewanella oneidensis. J Biol Chem 281:29872–29885
Article
CAS
PubMed
Google Scholar
Yang Y, Harris DP, Luo F, Wu L, Parsons AB, Palumbo AV, Zhou J (2008) Characterization of the Shewanella oneidensis Fur gene: roles in iron and acid tolerance response. BMC Genom 9:S11
Article
CAS
Google Scholar
Yang Y, Harris DP, Luo F, Xiong W, Joachimiak M, Wu L, Dehal P, Jacobsen J, Yang Z, Palumbo AV, Arkin AP, Zhou J (2009) Snapshot of iron response in Shewanella oneidensis by gene network reconstruction. BMC Genom 10:131
Article
CAS
Google Scholar
Yin J, Meng Q, Fu H, Gao H (2016) Reduced expression of cytochrome oxidases largely explains cAMP inhibition of aerobic growth in Shewanella oneidensis. Sci Rep 6:24449
Article
CAS
PubMed
PubMed Central
Google Scholar
Yoshizawa T, Miyahara M, Kouzuma A, Watanabe K (2014) Conversion of activated-sludge reactors to microbial fuel cells for wastewater treatment coupled to electricity generation. J Biosci Bioeng 118:533–539
Article
CAS
PubMed
Google Scholar
Yu YY, Fang Z, Gao L, Song H, Yang L, Mao B, Yong YC (2018) Engineering of bacterial electrochemical activity with global regulator manipulation. Electrochem Commun 86:117–120
Article
CAS
Google Scholar
Yuan J, Wei B, Lipton MS, Gao H (2012) Impact of ArcA loss in Shewanella oneidensis revealed by comparative proteomics under aerobic and anaerobic conditions. Proteomics 12:1957–1969
Article
CAS
PubMed
Google Scholar
Zhao JS, Deng Y, Manno D, Hawari J (2010) Shewanella spp. genomic evolution for a cold marine lifestyle and in situ explosive biodegradation. PLoS ONE 5:e9109
Article
PubMed
PubMed Central
CAS
Google Scholar
Zheng T, Xu YS, Yong XY, Li B, Yin D, Cheng QW, Yuan HR, Yong YC (2015) Endogenously enhanced biosurfactant production promotes electricity generation from microbial fuel cells. Bioresour Technol 197:416–421
Article
CAS
PubMed
Google Scholar
Zhou L, Srisatjaluk R, Justus DE, Doyle RJ (1998) On the origin of membrane vesicles in gram-negative bacteria. FEMS Microbiol Lett 163:223–228
Article
CAS
PubMed
Google Scholar
Zhou G, Yuan J, Gao H (2015) Regulation of biofilm formation by BpfA, BpfD, and BpfG in Shewanella oneidensis. Front Microbiol 6:790
PubMed
PubMed Central
Google Scholar