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Chlorophyll as key indicator to evaluate astaxanthin accumulation ability of Haematococcus pluvialis
Bioresources and Bioprocessing volume 6, Article number: 52 (2019)
Natural astaxanthin is mainly derived from Haematococcus pluvialis. In the photoinduction phase, astaxanthin accumulation ability can be significantly affected by the characteristics of H. pluvialis cells in the proliferation phase. Based on sequential heterotrophy–dilution–photoinduction (SHDP) technology, the authors’ previous study showed that high astaxanthin accumulation ability is accompanied by high chlorophyll content of H. pluvialis heterotrophic cell; whereas the mechanism of this result remained largely obscure. Therefore, transcriptome analysis was conducted to explain this mechanism.
RNA-seq analysis showed that the transcription level of chlorophyll synthesis-related genes was negatively correlated with genes related to astaxanthin synthesis. A metabolic network between chlorophyll synthesis and astaxanthin accumulation was proposed.
The relationship between chlorophyll synthesis and astaxanthin accumulation was clarified. Chlorophyll degradation products might be used for astaxanthin synthesis through certain pathways. This study enlightens on the mechanism for the transformation of pigment and is conducive to optimize culture process of H. pluvialis by improving the chlorophyll content of heterotrophic cell.
Astaxanthin, a non-vitamin A source of carotenoids, is the final product of carotene synthesis, and is regarded as the best natural antioxidant. The primary sources of astaxanthin are chemical synthesis and natural astaxanthin. Synthetic astaxanthin is mainly used for feed additive in aquaculture and cannot be used for food additives, due to its low antioxidant activity (only 1/20 times of natural astaxanthin) and safety risk (Koller et al. 2014; Lorenz and Cysewski 2000). As for natural sources, Haematococcus pluvialis is considered as the best source of astaxanthin (Wang et al. 2011).
The culture model of two stages has been successfully achieved in H. pluvialis. In the first stage, sufficient nutrient was provided to obtain high cell yield. In the second stage H. pluvialis can rapidly accumulate astaxanthin under strong light, high salinity or other extreme environments (He et al. 2007; Lorenz and Cysewski 2000). However, the certain time that cells at the first stage (cell growth) could be transferred to the second stage (astaxanthin photoinduction) is inconclusive. Simply transferring the cells with different cell characteristics from the first stage to the second stage would lead to large variation of astaxanthin accumulation.
The sequential heterotrophy–dilution–photoinduction (SHDP) technology of H. pluvialis was established by us (Wan et al. 2015). First, cells were cultivated heterotrophically to achieve a high cell density, then were diluted to a suitable concentration and switched to a favourable environment for cells acclimation. Finally, the culture was transferred to high light environment for astaxanthin accumulation. Based on this technology, authors’ previous studies showed that chlorophyll content of heterotrophic cell was the key characteristics related to the astaxanthin accumulation ability. However, the mechanism of this phenomenon was still unclear. Therefore, transcriptome analysis was conducted to explain this mechanism.
In this study, the possible molecular mechanism was detailed elaborated by RNA-sequencing analysis, and a metabolic network between chlorophyll synthesis and astaxanthin accumulation was proposed.
Haematococcus pluvialis strain ZY-18 was stored by the authors’ laboratory.
Heterotrophic culture conditions
The growth medium was NIES-C medium with 10 mmol/L sodium acetate (Hata et al. 2001). The seed cells were cultivated in 5-L fermenter. The culture temperature and agitation speeds were controlled at 25 °C and 40 r/min, respectively. The pH was kept between 7.5 and 8 by intermittent feeding of a concentrated medium as described by Hata et al. (2001). The aeration rate was kept at 0.4 m3/(m3 min) for the first 4 days and then increased gradually associated with the increasing cell concentration.
Photoinduction culture conditions
The indoor photoinduction was conducted in 1-L column bioreactors with a working volume of 0.8 L. 1-L column bioreactors were cylindrical glass tube (45 cm height, and 7 cm diameter) with a conical bottom (height: 6 cm). When the cells reached the specific stage, the culture was harvested by centrifugation at 2683×g for 10 min and was re-suspended in NIES-N medium (Kang et al. 2007). Hereafter, H. pluvialis was inoculated at 0.3 g/L in all the indoor photoinduction experiments (Wan et al. 2014a). The culture was then exposed to 540 µmol/(m2 s) under 24 h continuous light for 6 days. Culture temperature was kept at 28 °C. Continuous aeration was provided by 0.2 m3/(m3 min) with 0.5% (v/v) CO2 in order to maintain the pH value between 7 and 8.
Determination of cell characteristics
The measurement of dry weight was the same with Wan et al. (2014b). Cellular astaxanthin content (%) was measured using a spectrophotometric method as previously described by Wan et al. (2014b). Chlorophyll content (%) was determined using spectrophotometric method described by Lichtenthaler and Wellburn (1982).
Transcriptome sequencing and analysis
Based on SHDP technology, two cultivation routes, named Treatment group (1246 SHDP route, the order is samples 1, 2, 4 and 6) and Control group (1235 SHDP route, the order is samples 1, 2, 3 and 5), at six time points with two biological replicates were selected for transcriptome sequencing (Fig. 1). Sample 1: heterotrophic culture for 100 h (green motile cells accounted for the vast majority). Sample 2: heterotrophic culture for 250 h (non-motile cells accounted for the vast majority). Sample 3: heterotrophic culture for 550 h (brown akinetes accounted for the vast majority). Sample 4: photoinduced culture for 0.5 d by Sample 2 (green non-motile cells turn into brown akinetes). Sample 5: photoinduced culture for 6 d by Sample 3 (red akinetes accounted for the majority, astaxanthin content was high, and astaxanthin content was no longer increased). Sample 6: photoinduced culture for 6 d by Sample 2 (red akinetes accounted for the majority. Astaxanthin content was high, was no longer to increase, and was higher than that of sample 5).
Transcriptome sequencing was conducted in Shanghai Personal Biotechnology Company using Illumina NextSeq 500 sequencing platform. The adapter sequences were trimmed using Cutadapt and clean reads were assembled by Trinity (r20140717, k-mer 25 bp). The obtained transcripts were mapped to Non-Redundant Protein Sequence Database by BLAST (2.2.30+). The longest transcript mapped to same protein accession name was considered as a Unigene reference sequence. Transcriptome sequencing data have been deposited in National Omics Data Encyclopedia (NODE, https://www.biosino.org/node/) with the accession number OEP000493.
The Pearson correlation between genes related to chlorophyll metabolism and astaxanthin metabolism was analysed using R language. All experiments have two biological replicates. The data is presented as Mean ± SD.
Results and discussion
Transcriptome analysis related to astaxanthin accumulation and chlorophyll synthesis
RNA-seq analysis was conducted to investigate the underlying molecular mechanism of the correlation between astaxanthin accumulation and chlorophyll content. The psy, bkt and chyb genes, which successively catalysed geranylgeranyl-pp (GGPP) to astaxanthin, have been reported as essential genes in astaxanthin synthesis process (Huang et al. 2006; Zhong et al. 2011). The condensation of two δ-aminolevulinic acid molecules into chlorophyll is catalysed by chlD, chlE, chlI, hemB, hemC, hemF and hemL genes (Beale 2005).
In both groups (1246 SHDP route and 1235 SHDP route, shown in Fig. 2), the astaxanthin synthesis-related genes bkt, chyb and psy were down-regulated in the early stage of proliferation (from sample 1 to sample 2), and up-regulated in a low astaxanthin content akinetes formation stage (from sample 2 to sample 3) and photoinduction stage (from sample 2 to sample 4, sample 6 and from sample 3 to sample 5). Consistent with previous study, bkt gene was significantly up-regulated at the beginning of the photoinduction stage (Meng et al. 2010). LcyE enzyme catalyses the synthesis of lutein from lycopene (Kim et al. 2013). The lcyE gene was down-regulated in the whole SHDP process (Fig. 2). Additionally, in the control group (1235 SHDP route), the transcription trends of chlI, hemB, hemC, hemF and hemL genes in chlorophyll metabolism pathway were opposite with those of bkt, chyb and lcyB genes (Fig. 2a). In the treatment group (1246 SHDP route), the transcription trends of chlD, chlE and hemF genes in chlorophyll metabolism pathway have the opposite trend with bkt, chyb and psy genes (Fig. 2b).
Pearson correlation was used to analyse the relationship between chlorophyll metabolism and carotenoid metabolism
Pearson correlation between chlorophyll metabolism and astaxanthin metabolism-related genes was analysed to further elaborate the relationship between chlorophyll metabolism and astaxanthin synthesis. In the treatment group (1246 SHDP route), there are three carotenoid metabolism-related genes significantly correlated with seven chlorophyll metabolism-related genes (cor > 0.95, P < 0.05, Fig. 3a). In the control group (1235 SHDP route), there are five carotenoid metabolism-related genes significantly correlated with six chlorophyll metabolism-related genes (cor > 0.95, P < 0.05, Fig. 3b).
Consistent with RPKM analysis, in the control group (1235 SHDP route) (Fig. 3a), chyb gene related to astaxanthin synthesis, was negatively correlated with chlorophyll synthesis genes hemC and chlI. The lcyB gene was negatively correlated with hemB, hemF and hemL genes. However, the lcyE gene in lutein synthesis was positively correlated with chlM and hmox1 genes in chlorophyll synthesis. The astaxanthin synthesis-related genes chyb and psy, were negatively correlated with the chlE, chlM and chlD genes involved in chlorophyll synthesis. Meanwhile, the zds and lcyB genes were negatively correlated with the hemB, hemE and hemF genes. The lcyE gene in lutein synthesis was positively correlated with chlM and chlD genes in chlorophyll synthesis.
Metabolic network of chlorophyll synthesis and astaxanthin accumulation
To further analyse the relationship between chlorophyll metabolism and astaxanthin synthesis, the metabolic network of chlorophyll synthesis and astaxanthin accumulation was proposed (Fig. 4). Chlorophyll and carotenoids synthesis have the common intermediate substrate GGPP (Beck et al. 2013). Therefore, astaxanthin synthesis and chlorophyll synthesis have the substrate competition. When non-motile cells (sample 2) were transformed to low astaxanthin content akinetes (sample 3), and during the photoinduction process (sample 4, sample 5, sample 6), chyb, bkt and psy gene were up-regulated, and chlorophyll synthesis-related genes were down-regulated, which is beneficial to promote the transformation of GGPP into carotenoids synthesis. After that, lutein and astaxanthin could be synthesized. The common intermediate substrate for astaxanthin synthesis and lutein synthesis is lycopene. Notably, the up-regulation of lcyB was accompanied by the down-regulation of lcyE, which would decrease competition for the lycopene, suggesting carbon flow to astaxanthin synthesis. Gao et al. (2016) and He et al. (2018) reported that the up-regulation of lcyB was accompanied by the down-regulation of lcyE.
Above all, we hypothesized that more carbon flows to astaxanthin synthesis rather than to chlorophyll or lutein during photoinduction process. The mechanism of high astaxanthin accumulation ability accompanied with high chlorophyll content can be attributed to the up-regulation of astaxanthin synthesis-related genes and down-regulation of chlorophyll synthesis and lutein synthesis-related genes.
The changes of chlorophyll content and astaxanthin content during “sequential heterotrophy–dilution–photoinduction” cultivation
Based on SHDP cultivation model, the changes of chlorophyll content and astaxanthin content were detected to confirm the hypothesis that much more carbon flows to astaxanthin synthesis rather than to chlorophyll or lutein during photoinduction process. Known from Fig. 5, the chlorophyll content gradually decreased during the heterotrophic cell culture stage, while no significant changes of the astaxanthin content was found. However, the chlorophyll content dropped sharply and fell to a tiny level within 48 h of photoinduction, while the astaxanthin content accumulated in a dramatically high rate. Kim et al. (2011) also showed that chlorophyll content decreased during photoinduction.
The study has shown that photosynthesis electron transfer rate was the fastest in the first 3 days of photoinduction (Zhang et al. 2017). That is, energy provider can accelerate the astaxanthin synthesis (Schoefs et al. 2001). Chlorophyll plays an important role in absorbing light energy and transmitting light energy through a photosynthetic electron transport chain (Tanaka & Tanaka, 2007). Therefore, high chlorophyll content of heterotrophic cell is attributed to the high astaxanthin accumulation speed.
What is more, chlorophyll can be degraded to phytol, which is eventually oxidized to different isoprenoid compounds (Rontani et al. 1996). Isoprene pyrophosphate could be used as a substrate for astaxanthin synthesis. Therefore, it is speculated that chlorophyll degradation product may be used for the synthesis of astaxanthin through certain pathways.
A metabolic network between chlorophyll synthesis and astaxanthin accumulation was proposed. The mechanism of high astaxanthin accumulation ability accompanied with high chlorophyll content can be attributed to the up-regulation of astaxanthin synthesis-related genes and the down-regulation of chlorophyll synthesis and lutein synthesis-related genes. Chlorophyll degradation product may be used for the synthesis of astaxanthin through certain pathways. This study is conducive to understand the mechanism of astaxanthin accumulation and to improve the industrial astaxanthin productivity of H. pluvialis by increasing the chlorophyll content of heterotrophic cell.
Availability of data and materials
The datasets supporting the conclusions of this article are included in the main manuscript file.
reads per kilobase per million mapped reads
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This research was funded by National Natural Science Foundation of China (31500062), China Postdoctoral Science Foundation (2014T70400), and Fundamental Research Funds for the Central Universities (222201414024).
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Fang, L., Zhang, J., Fei, Z. et al. Chlorophyll as key indicator to evaluate astaxanthin accumulation ability of Haematococcus pluvialis. Bioresour. Bioprocess. 6, 52 (2019) doi:10.1186/s40643-019-0287-z
- Haematococcus pluvialis
- Metabolic network
- Transcriptome analysis