Goat dung as a feedstock for hyper-production of amylase from Glutamicibacter arilaitensis strain ALA4
Bioresources and Bioprocessing volume 4, Article number: 43 (2017)
In modern times, bacteria-associated products; especially enzymes are gaining immense interest among worldwide researchers. Among several enzymes, amylases are of great significance in bioprocess engineering. This investigation was aimed to optimize the amylase production from Glutamicibacter arilaitensis strain ALA4 using goat dung as an inexpensive substrate in solid-state fermentation.
Amylase production was initially improved by optimizing physical factors and medium components by one factor at a time method. Two-level full factorial design (25 factorial matrix) was applied to screen the selected variables using first-order polynomial model. Parameters such as incubation temperature, moisture, starch, and yeast extract affected the amylase activity significantly (P < 0.05). Central composite design at N = 30 was further employed to evaluate the optimum levels of these variables by a second-order polynomial equation. Maximal amylase activity of 4572.53 ± 41.71 U/g was estimated in the goat dung medium supplemented with 100% moisture, 1% (w/w) starch, and 1% (w/w) yeast extract, being incubated at 40 °C. The optimized parameters revealed approximately twofold increment in the amylase yield (R 2 0.9169) with respect to the original medium. The amylase showed stability at high pH and temperature up to 4 h of incubation with residual activities of 52.32 ± 2.2 and 46.12 ± 3.3%, respectively. Additionally, the enzyme revealed resistant property not only towards various metal ions and organic solvents but also surfactants and inhibitors. Most importantly, the amylases obtained from strain ALA4 depicted remarkable tolerance to commercially available various detergents.
This study reports first reference on the hyper-production of amylase from G. arilaitensis using goat dung as the low-cost agro-waste medium. G. arilaitensis strain ALA4 may be utilized for wide spread applications in several bioprocess industries due to the high stability of its amylase towards diversified pH, temperature, solvents, surfactants, and detergents.
No doubt, amylases represent one of the most important groups of industrial enzymes, and occupy ~ 35% of global enzyme markets at present (Azad et al. 2009). These enzymes play tremendous role in diversified industries viz. dairy, food processing, chocolates, pharmaceuticals, leather, textiles, paper and pulp, wine, meat, fish processing, detergents, chemical, and bioenergy. Amylases act on starch or oligosaccharide molecules in a random manner and convert them into dextrins and progressively smaller polymers by hydrolyzing α-1,4- and α-1,6-glycosidic linkages. The starch hydrolyzing enzymes can be derived from several sources such as plants, animals, and microbes. But the exploitation of microorganisms for the production of amylases has gained immense interest among researchers in last few decades. Moreover, bacterial amylases have dominated as bioresources in industries due to their stability at harsh conditions, enhanced enzyme activity at optimized variables, rapid growth, easy maintenance, cost-effectiveness and accessibility for genetic manipulations to obtain enzymes of desired characteristics (Khusro et al. 2017). In recent years, amylases have been screened and characterized from novel strains of bacteria including Bacillus cereus (Roohi et al. 2013), Bacillus thuringiensis (Smitha et al. 2013), Aeromonas veroni and Stenotrophomonas maltophilia (Kumar et al. 2014), and Chryseobacterium sp. (Hasan et al. 2017).
The utilization of organic solid wastes for the production of value-added products, particularly enzymes from bacteria in economically developing countries is increasing nowadays. Nevertheless, organic wastes comprised materials rich in sugars, minerals, and proteins that could be used as substrates. Since the cultivation of bacteria requires carbon, nutrient, and moisture, organic waste could be a promising candidate to provide the appropriate environment for the bacterial growth. From these points of view, solid-state fermentation (SSF) is considered as a promising approach for waste valorization through the bioconversion of organic wastes used as either substrate or inert support (Yazid et al. 2017). SSF is a useful technique for the biosynthesis of enzymes and other metabolites in bacteria through the biorefineries of organic solid wastes. The organic wastes such as banana peel (Sajjad and Choudhry 2012), cow dung (Vijayaraghavan et al. 2015), brewery waste (Blanco et al. 2016), and kitchen wastes (Awodun et al. 2007) were recently used as promising substrates for the production of extracellular amylases. In spite of this, the quest of a novel, inexpensive, and easily available substrate for the hyper-production of amylases from new bacterial sources is a continuous process.
In SSF process, the solid materials are known to provide paramount nutrients for the growth of bacteria. Hence, an ideal solid substrate should contain adequate nutrients to support the bacterial growth and the production of enzymes. Goat dung is a cogent source of ash, carbon, nitrogen, phosphorus, potassium, calcium, magnesium, and other organic dry matter (Awodun et al. 2007), thereby indicating it as an efficacious feedstock for the growth of bacteria, and further production of enzymes from them in a cost-effective manner in several industrialized and developing countries. However, to the best of our knowledge, the report on the utilization of goat dung for the production of amylase from bacterial sources is unexploited and undetermined yet.
The fermentation medium optimization is an imperative step for the enhanced production of industrially important enzymes. The optimization of the fermentation medium by statistical methods is a promising approach to identify the significant variables responsible for the optimum production of enzymes. The statistical tools such as 25 full factorial design and central composite design (CCD) of response surface methodology (RSM) are decisive strategies to improve enzyme yield by designing minimum number of experiments for large number of factors. Most importantly, RSM explains the combined effects of selected variables in a fermentation process (Khusro et al. 2016). In last decade, plethoras of researches have been reported for the successful implementation of these statistical tools to enhance the production of industrially important enzymes from distinct microbial sources.
In view of the presence of ample nutritional constituents, easy availability, and cost-effectiveness characteristics, the present context was investigated to determine the unique potency of goat dung as substantial agro-residual waste substrate for the hyper-production of amylase from the new strain of Glutamicibacter arilaitensis. The process variables were further optimized using statistical tools, and the amylase was partially characterized for various industrial purposes.
Sampling and isolation of bacteria
Industrial waste dumped soil was collected from Ambattur Industrial Estate, Chennai, India. The sample was kept in sterilized polythene bag and brought to the laboratory for immediate processing. One gram of soil was suspended in 9 mL of sterile distilled water and serially diluted. Hundred microlitres of suspension were spread aseptically on sterilized agar plates (g/L; peptone—10.0; yeast extract—5.0; KH2PO4—1.0; MgSO4·7H2O—0.2; Na2CO3—10.0; NaCl—3.0; agar—20.0; and pH—7.0). These plates were incubated further at 37 °C for 24 h and observed for the development of colonies. After required period of incubation, the morphologically dissimilar colonies were streaked on freshly prepared agar media in order to obtain pure culture. These purified bacterial cultures were maintained in 50% (v/v) glycerol at − 80 °C for further qualitative assay of extracellular amylase production.
Screening of hyperamylase producing bacteria
All the isolates were grown in the sterilized fermentation medium consisted of: [(% w/v) peptone—1.0; yeast extract—0.5; KH2PO4—0.1; MgSO4·7H2O—0.02; Na2CO3—1.0; NaCl—0.3; starch—1.0, agar—2.0; and pH—7.0], and incubated at 37 °C for 24 h with an agitation speed of 130 rpm. After 24 h of incubation, all the cultures were centrifuged at 8000g for 15 min and supernatants were collected for qualitative assay. On the other hand, starch agar media (g/L: starch—10.0, agar—20.0 and pH—7.0) were prepared and wells were made using cork borer. The collected supernatants were poured into the respective well of each plate and incubated further at 37 °C for 24 h. After the incubation period, the starch agar plates were flooded with iodine solution and observed for the largest halo zone of starch hydrolysis. The potent bacterium with hyperamylase producing ability was selected for further experimental purposes. This selected strain was subjected to morphological, biochemical and molecular characterization studies.
Genomic DNA of bacteria was isolated and the amplicon was obtained using the thermal cycler (Eppendorf Gradient, Chennai, India) and universal primers. The amplicon was purified and the sequencing of 16S rRNA was done using an automated sequencer (Genetic Analyzer 3130, Applied Biosystems, Foster city, CA, USA). Further, the similarity search of the sequence was carried out using the NCBI, BLAST and the sequences were submitted to GenBank.
The agro-wastes viz. banana peel, paddy straw, wheat bran, rice bran, corn cob, rice flour, and sugarcane bagasse were collected from local market of Nungambakkam, Chennai, India, and dried for 7–10 days at room temperature. On the other hand, goat dung was collected locally and dried for 7–10 days in sunlight. These dried agro-wastes were powdered using a mixer grinder, sieved and stored in screw capped bottle for further process.
Ten grams of the solid substrates (banana peel, paddy straw, goat dung, wheat bran, rice bran, corn cob, rice flour, and sugarcane bagasse) were taken separately in 250 mL Erlenmeyer flasks and the moisture content was maintained as 100% using tris–HCl buffer (pH 8.0, 0.1 M). The contents were mixed and sterilized at 121 °C for 15 min. After cooling the flasks, 5% bacterial inoculum (OD600nm = 1.12) was inoculated aseptically and incubated at 37 °C for 48 h under static conditions. After required period of incubation, 50 mL of sterilized distilled water was added to the fermented substrate, and further incubated in an orbital shaker at 150 rpm for 30 min to extract the enzyme. The mixture was filtered, and cultures were further centrifuged at 8000g for 15 min. The clear supernatant obtained was used as the source for crude amylase.
Quantitative assay for amylase
Amylase activity was assayed according to the methodology of Miller (1959) with slight modifications. The supernatant of 48 h grown bacterial culture under SSF was used as crude amylase. One milliliter of supernatant was mixed with 1 mL of solubilized starch solution (1% w/v) and the reaction mixture was incubated at 60 °C for 10 min. The reaction was stopped by adding 1 mL of dinitrosalicylic acid (DNS) into it and the solution was later incubated at 100 °C for 5 min. The solution was allowed to cool and further centrifuged at 8000g for 10 min. The absorbance of the supernatant was read at 540 nm. One unit of amylase activity was estimated as the amount of enzyme releasing 1 µg of reducing sugar as maltose per minute, under specific assay conditions. Total extracellular protein content was estimated using bovine serum albumin as standard (Bradford 1976).
Optimization of amylase production by one-factor-at-a-time approach
One-factor-at-a-time (OFAT) based approach was initially implemented to screen the influence of various process parameters on amylase production from the isolate. Ten grams of goat dung was moistened with 10 mL of tris–HCl buffer (pH 8.0, 0.1 M) in 250 mL Erlenmeyer flask. The diverse culture conditions viz. incubation period (12–96 h), pH (6.0–11.0), temperature (32–60 °C), inoculum (7.31–54.82 log CFU/mL), moisture content (60–120%), and medium components such as carbon sources (1% w/w—glucose, sucrose, maltose, starch, xylose, mannose and lactose) and nitrogen sources (0.5% w/w—peptone, casein, yeast extract, beef extract, tryptone, potassium nitrate, ammonium sulphate and ammonium chloride) were taken into consideration to optimize and enhance the amylase yield from the bacteria. SSF and amylase assay were carried out as described earlier.
Full factorial matrix
Two-level full factorial design was applied to optimize five selected variables (pH, temperature, moisture content, starch and yeast extract) to achieve enhanced production of amylase from the isolate. Other parameters such as incubation period and inoculum level were maintained at their middle levels. These selected variables were tested at two levels, high (+) and low (−) during a total of 32 experimental runs. Experiments were carried out using goat dung as substrate under SSF for 48 h with 18.27 log CFU/mL of bacterial culture. The statistical parameters were evaluated using analysis of variance (ANOVA), and P < 0.05 was considered as significant. The impact of variables on the response was calculated using first-order polynomial model:
where Y is the response (amylase activity), α 0 is the intercept, α i is the ith linear coefficient, α ij , α ijk , α ijkl and α ijklm are the interaction coefficients.
The goodness of fit of the first-order polynomial equation was expressed by coefficient of determination (R 2) and its statistical significance level was checked by F test, keeping desirability at maximum.
Response surface methodology
Response surface methodology (RSM) was implemented to optimize the culture conditions and medium components that significantly affected the amylase yield after two-level factorial matrix. The influencing factors viz. temperature, moisture, starch and yeast extracts were optimized further for enhancing extracellular amylase yield of the strain using central composite design (CCD). Each variable in the design matrix was employed at five different levels (− α, − 1, 0, + 1, + α). The five coded levels of alpha, studied in the present study were − 2, − 1, 0, + 1 and + 2. According to the present experimental design, the total number of treatment combinations is 2k + 2k + n, where ‘k’ is the number of variables and ‘n’ is the number of repetition of experiments at the central point. The experimental plan of independent variables with respect to their values in actual and coded form is shown in Table 2. The effects of selected factors to the response were estimated by a second-order polynomial equation:
where Y = response variable (amylase activity), β 0 = intercept, β 1, β 2, β 3 and β 4 = linear coefficients, β 11, β 22, β 33 and β 44 = squared coefficients, β 12, β 13, β 14, β 23, β 24, and β 34 = interaction coefficients, A, B, C, D, A 2, B 2, C 2, D 2, AB, AC, AD, BC, BD and CD = levels of independent variables.
The 3D response plot was used to understand the interrelationship among diversified factors and to predict optimum ranges responsible for the enhanced production of amylase.
Validation of design
The validation of the experimental design for amylase production was conferred under SSF by carrying out the experiments based on the optimum values of variables selected using CCD. The experiments were carried out in triplicate and the enzyme activity of the isolate was estimated according to the methodology as described earlier, and then compared with the predicted values of amylase yield.
Partial characterization of amylase
The crude amylase obtained from the isolate under optimized culture conditions and medium components of CCD was used for the characterization studies. The stability of amylase at diversified pHs (pH 6.0–11.0) was evaluated using sodium phosphate (0.1 M; pH 6.0–7.0), tris–HCl (0.1 M; pH 8.0–9.0), carbonate–bicarbonate (0.1 M; pH 10.0), and glycine–NaOH (0.1 M; pH 11.0) buffer solution under standard assay conditions. To check the stability of amylase at varied pH, 100 µL of enzyme solution was mixed with 900 µL of above mentioned respective buffer solution and incubated up to 4 h. The residual activity of enzyme at 1 h interval was determined as described earlier. To evaluate the temperature stability of amylase, the enzyme solution was subjected to denaturation at diverse temperatures ranging from 35 to 85 °C up to 4 h of incubation, and the residual activity of the enzyme was estimated. To investigate the impact of ions on amylase stability, the enzyme solution was preincubated with different divalent metal ions (10 mM) viz. Mg2+, Ca2+, Hg2+, Zn2+, Cu2+, Fe2+, Mn2+, and Co2+ at optimum temperature, and the residual activity of amylase was estimated against the control (enzyme solution devoid of ions) under standard assay conditions after 4 h of incubation.
Eco-friendly applications of amylase
The thermo-alkali and metal ions stable amylase obtained from the isolate was further evaluated for its stability towards various organic solvents, surfactants, inhibitors, and detergents. The enzyme solution was initially filtered using nitrocellulose membrane (0.2 µm), and then incubated with 40% (v/v) of varied polar and non-polar organic solvents viz. n-hexane, n-butanol, benzene, toluene, ethanol, methanol, ethyl acetate, chloroform, acetone, and propanol for 7 days in screw crapped tubes. After required period of incubation, the residual activity of amylase was estimated against the control (enzyme solution without addition of organic solvents) according to the methodology as described earlier. In addition to this, the stability of amylase was determined in the presence of various surfactants (1%; Tween 20, Tween 40, Tween 60, Tween 80, and SDS), inhibitors (1 mM; EDTA, hydrogen peroxide, and mercaptoethanol), and detergents (1%; Tide, ARIEL, Surf excel, POWER, Wheel, Nirma, and RIN). The detergent solution was initially boiled for 15–20 min to denature or inactivate the existing enzymes that could be incorporated during their formulation. The amylase was then incubated with these detergent solutions, and the reaction mixture was incubated for 24 h. The residual activities of amylase were estimated against the control (enzyme solution devoid of surfactants, inhibitors, and detergents) under standard assay conditions as described earlier.
All variables were optimized and interpreted using Design Expert Version 10.0.0 (Stat-Ease Inc., Minneapolis, Minnesota, USA) statistical software. ANOVA was used to validate statistical parameters. The values “P < 0.05” were considered statistically significant. All the experiments were carried out in triplicate and data were expressed as mean ± SD.
Screening and identification of hyperamylase producing bacteria
Of 56 morphologically dissimilar purified bacterial isolates, 30 isolates were identified as extracellular amylase producing bacteria. Among 30 isolates, one potent bacterium was selected based on its hyper amylolytic zone on starch agar plate (figure not shown). The colony of the selected isolate was round, opaque, and white in colour. Microscopically, the bacterium was rod-shaped. Further, the isolate was identified as catalase and protease positive. The isolate had potentiality to ferment various saccharides viz. glucose, sucrose, arabinose, mannitol and trehalose. The isolate showed negative results towards Malonate, Indole, Voges-proskauer, Citrate utilization, ONPG, Nitrate reductase and Arginine. The isolate was identified as G. arilaitensis strain ALA4 based on 16S rRNA gene sequencing (1238 bp; Accession Number KY795955).
Solid-state fermentation using various agro-residues
Glutamicibacter arilaitensis strain ALA4 utilized all the agro-residues for the growth and subsequent production of extracellular amylase. The enzyme yield was observed to be varied with the type of substrate implemented under SSF. The study revealed that maximum production of amylase (1723.65 ± 32.3 U/g) was obtained using goat dung as substrate. On the other hand, amylase production was observed to be in the order of 1386.25 ± 28.2 > 1302.28 ± 34.9 > 1121.23 ± 26.3 > 973.45 ± 31.6 > 862.45 ± 33.4 > 765.35 ± 25.3 > 585.23 ± 23.2 U/g, for paddy straw, wheat bran, rice bran, sugarcane bagasse, corn cob, banana peel, and rice flour, respectively (Fig. 1).
Optimization of amylase production by OFAT method
The influence of incubation period on amylase yield from strain ALA4 is shown in Fig. 2a. The amylase activity was found to be increased linearly with increase in the incubation time up to 48 h (1790.32 ± 31.3 U/g), and decreased thereafter. pH of the fermentation medium ranging from 6 to 11 showed profound impact on the amylase activity. The amylase activity gradually increased with increase in the pH of the fermentation medium, being the maximum at pH 8 (1923.45 ± 32.3 U/g). Further increase in pH depicted the significant reduction in the amylase activity (Fig. 2b). Figure 2c shows the effect of varied incubation temperature on the amylase activity of strain ALA4. The optimum temperature for the amylase production from the isolate was observed to be at 42 °C (2042.14 ± 25.9 U/g). There was a gradual reduction in the amylase activity of strain ALA4 at higher incubation temperature, being the lowest at 60 °C (732.12 ± 23.3 U/g). There was not much variation observed in the amylase yield at different inoculum of strain ALA4 (Fig. 2d). Maximum amylase activity of 2012.14 ± 23.3 U/g was observed at 18.27 log CFU/mL of bacterial culture. The amylase yield of 1412.21 ± 24.2, 1998.14 ± 30.2, and 1802.12 ± 31.3 U/g was observed at 7.31, 36.55, and 54.82 log CFU/mL of strain ALA4, respectively. The maximum amylase activity of 2108.23 ± 33.3 U/g was observed with 100% moisture content. The enzyme production was found to be affected significantly at lower and higher moisture levels, thereby estimating activity of 665.34 ± 28.3, 834.12 ± 26.2, 1223.12 ± 30.3, 1534.23 ± 31.2, 1712.23 ± 25.4, and 1668.14 ± 21.2 U/g with moisture levels of 60, 70, 80, 90, 110, and 120%, respectively (Fig. 2e).
Among the diversified carbon sources tested, starch was found to be the most potent inducer of amylase activity (2293.34 ± 30.3 U/g) from strain ALA4, while relatively lower amylase yield ranging from 612.12 ± 18.3 to 1834.23 ± 23.2 U/g was observed with other carbon sources used such as lactose, mannose, xylose, glucose, maltose, and sucrose (Fig. 2f). The supplementation of various organic and inorganic nitrogen sources into the fermentation medium showed that strain ALA4 had potentiality to grow and produce amylase in the presence of tested nitrogen sources (Fig. 2g). Maximum amylase activity of 2367.12 ± 31.3 U/g was observed in the culture medium supplemented with yeast extract, followed by peptone (1932.12 ± 27.3 U/g), beef extract (1816.12 ± 30.2 U/g), casein (1632.12 ± 25.2 U/g), tryptone (1312.14 ± 28.3 U/g), potassium nitrate (1112.14 ± 24.4 U/g), ammonium chloride (842.14 ± 18.6 U/g), and ammonium sulphate (732.14 ± 18.2 U/g).
Optimization of variables by 25 full factorial design
In the present context, five variables viz. pH, temperature, moisture content, starch, and yeast extract were selected further for enhancing the amylase yield by two-level full factorial design based on the preliminary amylase activity results obtained through OFAT approach. The selected variables and their respective ranges are shown in Table 1.
Table 2 describes the experimental design as well as amylase activity for 32 runs. The amylase activity in 25 full factorial design varied substantially ranging from 1512.34 ± 48.3 to 3023.12 ± 42.14 U/g, and showed more or less equivalent values in a comparison with predicted response. The amylase activity was observed to be enhanced when the medium containing goat dung was supplemented with 0.5% (w/w) starch, 0.5% (w/w) yeast extract, and maintained at pH 7.0, temperature 37 °C, with 100% moisture content under SSF. ANOVA was determined to validate the model, and the results have been incorporated in Table 3. The model F-value of 20.82 implies the model is significant. Values of “Prob > F” < 0.05 indicate model terms are significant. In this case temperature (B), moisture (C), starch (D), and yeast extract (E) were observed to be statistically significant (P < 0.05). Similarly, the interactive variables viz. AB, AC, AD, BC, CE, ABC, ABD, ABE, ACE, and ABCE were proved to be significant model terms. The R 2 value (0.9706) of this model was close to the Adj-R 2 value (0.9240). The Pred R 2 of 0.7907 is in reasonable agreement with the Adj R 2 value. “Adeq Precision” measures the signal to noise ratio. A ratio greater than 4 is desirable. In the present model, a ratio of 24.085 indicates an adequate signal. Thus, this model can be used to navigate the design space. The model equation for the amylase activity can be written as given below-
The variables significantly influencing the amylase activity were further optimized using CCD, keeping pH at middle level.
Response surface methodology
Table 4 represents the four variables with their respective low, middle and high ranges used in CCD optimization strategy. The CCD matrix of these factors in coded units along with experimental and predicted values of response is given in Table 5.
The amylase activity (Y) optimized through CCD was calculated by the following model equation:
The maximum amylase activity of 4572.53 ± 41.71 U/g was obtained from Run No. 12, which consisted of media supplemented with 1% (w/w) starch, 1% (w/w) yeast extract, and 100% moisture, in addition to being incubated at 40 °C. The amylase yield from strain ALA4 obtained through CCD, was enhanced about twofold in a comparison with OFAT method, and found to be very much close to the predicted response.
ANOVA for amylase quadric model is provided in Table 6. The model F-value of 20.97 implies the model is significant. There is only 0.01% chance that a large “Model F-value” could occur due to noise. Values of “Prob > F” < 0.05 indicate model terms are significant. In this case A, D, AB, AD, BC, BD, and CD are significant model terms. The “Lack of Fit F-value” of 2.06 implies the Lack of Fit is not significant relative to the pure error. Non-significant lack of fit is good for the model to fit. The R 2 (0.9160) denotes better correlation between observed and predicted response values, and indicates the model accurate. In the present context, a low CV (3.67%) denotes that the experiments performed are highly reliable and precise. The “Predicted R 2” of 0.7946 is in reasonable agreement with the “Adj R 2” of 0.8732. “Adeq Precision” ratio of 18.572 (> 4) indicates an adequate signal and suggests to navigate the design space. Further, the distribution of experimental and predicted values for amylase activity was demonstrated by Parity plot where data points were localized close to the diagonal line, suggesting that the model was accurate and satisfactory (figure not shown).
Figure 3a–f depicts three-dimensional (3D) interaction between variables optimized through CCD for enhanced response. Figure 3a shows the response graph of interaction between temperature (A) and moisture (B). The 3D plot clearly illustrates that the response was influenced at lower level of temperature (40 °C), and middle level of moisture (100%). The interaction between temperature and starch concentration (C) on amylase activity is shown in Fig. 3b. The response was influenced at lower level of temperature (40 °C), and middle level of starch concentration (1% w/w). Figure 3c illustrates the interdependent interaction between temperature and varied yeast extract concentrations (D). The amylase activity was found to be increased significantly at lower level of incubation temperature (40 °C), and higher level of yeast extract concentration (1% w/w). The effect of varied moisture and starch concentration is shown in Fig. 3d. Both the variables at their respective middle levels showed enhancement in amylase yield. Figure 3e illustrates that the amylase activity was influenced at middle level of moisture (100%), and higher level of yeast extract (1% w/w). In this manner, Fig. 3f illustrates that the response was enhanced at middle level of starch (1% w/w), and higher level of yeast extract concentration (1% w/w). The normality assumption v s internally studentized residuals were found to be satisfactory due to the plot obtained in straight line (figure not shown).
The validation of the statistical strategy was carried out under above mentioned optimized parameters selected through CCD. The amylase activity of about 4572.53 ± 40.21 U/g was estimated at the following medium constituents and culture condition values—starch 1% (w/w), yeast extract 1% (w/w), moisture 100%, and incubation temperature 40 °C. The observed dependent response was very much close to the predicted response value of 4467.95 ± 40.61 U/g, thereby indicating the validation of model towards enhanced amylase yield. Most importantly, the reasonable R 2 value illustrates the valid behaviour of the statistical strategy that can be implied for interpolation in the observational domain.
Partial characterization of amylase
The amylases obtained from strain ALA4 at statistically optimized conditions were further assessed for stability towards diversiform ranges of pH (Fig. 4a). The enzyme was found to be stable at a wide range of pH from 6.0 to 10.0. The amylase showed stability up to pH 10.0 for 4 h of incubation with 52.32% of residual activity, and reduced rapidly thereafter.
Figure 4b depicts the stability of amylase at varied ranges of incubation temperature. The enzyme showed stability up to 65 °C for 4 h of incubation with 46.12% of residual activity, and reduced drastically thereafter. The amylases were found to be highly stable to the metal ions in the order of Ca2+ > Mg2+ > Mn2+ > Cu2+ > Fe2+ > Zn2+ > Co2+ > Hg2+ with residual activities of 98.32 ± 3.3, 96.12 ± 3.3, 92.24 ± 3.3, 66.15 ± 2.3, 60.04 ± 2.4, 58.12 ± 3.2, 52.13 ± 2.3, and 28.22 ± 1.3%, respectively (Fig. 4c).
The amylase of strain ALA4 was found to be promising in terms of resistivity towards various organic solvents studied (Fig. 5a). The study showed stability of enzyme in the presence of n-hexane, n-butanol, benzene, toluene, ethanol, methanol, ethyl acetate, chloroform, acetone, and propanol with residual activities of 73.16 ± 3.3, 68.13 ± 3.3, 36.12 ± 1.3, 67.14 ± 3.2, 91.16 ± 2.3, 84.12 ± 2.4, 80.14 ± 3.3, 70.13 ± 2.1, 78.15 ± 3.3, and 51.23 ± 2.2%, respectively.
The enzyme showed high tolerant characteristics in the presence of varied surfactants tested (Fig. 5b). Maximum residual activity of 96.17 ± 3.3% was estimated for amylase in the presence of Tween 20, followed by Tween 40 (92.12 ± 2.3%), Tween 60 (90.14 ± 3.2%), Tween 80 (82.12 ± 2.3%), and SDS (52.16 ± 2.4%). Additionally the amylases showed remarkable resistance against inhibitors such as EDTA and mercaptoethanol with residual activities of 44.26 ± 2.1% and 40.15 ± 2.2%, respectively. The stability of enzyme was reduced in the presence of hydrogen peroxide with the least residual activity of 14.12 ± 1.1% (Fig. 5b).
Amylases obtained from strain ALA4 retained its maximum stability in the presence of detergents such as Tide (90.13 ± 2.3%) and ARIEL (85.34 ± 2.4%). A marginal reduction in the stability of amylase was obtained in the presence of detergents like surf excel, POWER, Wheel, Nirma, and RIN (Fig. 5c).
In the present context, a hyperamylase producing bacterium was isolated from industrial waste soil sample. The isolate was identified as G. arilaitensis based on morphological, biochemical, and molecular characterization. This new isolate was further submitted to Genbank and identified as G. arilaitensis strain ALA4 with 99% 16S rRNA gene sequencing similarity report. 16S rRNA gene sequences, due to the presence of highly conserved regions, are widely studied as the most common molecular marker to understand the phylogeny and taxonomy of any bacterium. In fact, these sequences describe the level and occurrence of phylogenetic relationships because of the presence of species-specific variable regions. This molecular technique has been extensively used for bacterial phylogeny, thereby leading to the establishment of large public-domain databases and its vast exploitation in the identification of bacteria (Khusro and Aarti 2015). The identification of bacterium using 16S rRNA sequencing in the present investigation is consistent with other related current reports (Dash et al. 2015; Dey et al. 2016). In recent years, a special attention had been given to the production of amylases from novel strains of bacteria such as Halomonas meridian (Coronado et al. 2000), Rheinheimera aquimaris (Ghasemi et al. 2010), Bacillus barbaricus, Aeromonas veroni and Stenotrophomonas maltophilia (Kumar et al. 2014), and Chryseobacterium sp. (Hasan et al. 2017). In the line of those reports, we had undertaken a further significant attempt towards the amylolytic research, and isolated a new strain of G. arilaitensis with hyperamylase producing potentiality.
In last few decades, SSF has received great attention, and preferred to submerged fermentation (SmF) for the production of industrially value-added products, especially amylase. The success of bioprocesses in SSF is linked to the suitability of various strains of bacteria, substrates, and process variables. The selection of appropriate substrates plays a pivotal role not only in the efficient and cost-effective production of enzymes but also the growth and development of bacteria. In the present investigation, among varied agro-residues used, goat dung was found to be an appropriate substrate for the growth of strain ALA4 under SSF, and revealed the maximum production of amylases from them. This might be because of the high moisture holding capability of goat dung in a comparison with other agro-residues. Moreover, goat dung may be utilized as promising substrate for the amylase production due to its easy availability nature, cost-effectiveness, and most importantly the presence of high nutrients (g/kg: Soluble carbohydrate-6.35, Crude protein-9.6, Ash-85.8, C-250, N-26, P-4, K-46, Ca-7, Mg-12.1; mg/kg: Mn-48, Fe-73, Cu-7.6, and Zn-37) with respect to other agro-residues (Mnkeni and Austin 2009). In addition to the above mentioned characteristics of goat dung as condign substrate for amylase productivity from strain ALA4, this inexpensive organic waste can be used not only to mitigate the environmental pollution but also achieve the strategy for cleaner society. Recently, few investigations had already reported the overwhelming yield of amylases from distinct bacterial sources using unique organic wastes viz. cassava bagasse (Ray and Kar 2009), cow dung (Vijayaraghavan et al. 2015), potato starchy wastes (Abd-Elhalem et al. 2015), and organic chicken wastes (Hasan et al. 2017). But study on the utilization of goat dung as feedstock for the successful production of amylase is not evidenced so far. Thus, the present study determined a versatile role of goat dung as inexpensive substrate for the production of amylolytic enzyme from G. arilaitensis strain ALA4.
The optimization of medium constituents and other abiotic factors are crucial to obtain high yield of amylases from specific bacterial sources. Cultivation period is one of the most important parameters that contribute a pivotal role in the productivity of enzymes. In the present context, strain ALA4 revealed maximum amylase activity at 48 h of incubation under SSF. The decline in the amylase yield thereafter might be due to the fact that strain ALA4 entered stationary phase, and produced high level of secondary metabolites in the medium due to the exhaustion of nutrients, thereby reducing the fermentation process. The time course study of OFAT approach was found to be in complete agreement with the report of Deb et al. (2013) who also demonstrated the maximum amylase yield from the isolate at 48 h of incubation period. In contrary to this, Nusrat and Rahman (2007) reported increased amylase yield up to 72 h of incubation. The finding of the present study proved to be an outstanding approach in terms of saving the necessity of energy for fermentation process and providing relatively an efficient handling.
According to the present study, strain ALA4 showed maximum amylase activity at pH 8, and decreased significantly at lower and higher pH values. Similar observations were reported by Hasan et al. (2017) too. The reduction in amylase activity after altering the pH of the culture medium might be due to the denaturation or inactivation of proteins. On the other hand, the optimum temperature for the increased amylase activity of strain ALA4 was found to be 42 °C. Further increment in the temperature showed reduction in the amylase activity, suggesting susceptibility of strain ALA4 at higher temperature. In fact, alteration in the incubation temperature affects the bacterial biomass, thereby causing change in the amylase yield. In the line of our findings, Das et al. (2004) reported more or less similar results, demonstrating the temperature range of 35–45 °C for the production of amylase by Bacillus sp. In the present investigation, the inoculum level had no influence towards the enhancement of amylase yield. The amylase activity was found to be decreased at higher inoculum level of strain ALA4. This might be due to the rapid growth of bacteria and rapid utilization of available nutrient sources in the initial stages. Similar observation was reported by Dash et al. (2015) as well. Moisture is one of the crucial parameters that strongly influence the enzyme yield from bacteria under SSF. In this context, strain ALA4 revealed maximum amylase activity at 100% moisture content. A significant reduction in the amylase activity of strain ALA4 was recorded at lower and above the optimum moisture content. This might be mainly due to the lower degree of goat dung swelling at low moisture content, thereby affecting amylase yield drastically. In general, the enzyme yield is influenced by the bacteria and substrate used under SSF (Prakasham et al. 2005).
Medium components such as carbon and nitrogen sources have profound impact on the amylase production from bacterial sources. In this study, strain ALA4 showed maximum amylase activity when the goat dung medium was supplemented with starch. It might be due to the fact that starch is metabolized slowly by the isolate as complex substrate with increasing accumulation of inducible amylase in the culture medium. The supplementation of other carbon sources revealed the reduced amylase yield under SSF. The utilization of soluble starch for the production of reasonable amount of extracellular amylase was previously reported by Tiwari et al. (2014) and Khusro and Aarti (2015). In contrary to this, Narang and Satyanarayana (2001), and Vijayaraghavan et al. (2015) demonstrated the increased amylase yield in the presence of lactose and fructose, respectively, from respective bacterial sources. In the present investigation, among eight nitrogen sources tested, yeast extract (organic nitrogen source) depicted the maximum yield of extracellular amylase. Similar observations were reported by Sharma et al. (2012) who demonstrated yeast extract as potent inducer of amylases from B. amyloliquefaciens. The availability of essential elements, coenzymes, nitrogenous constituents, and growth factors in yeast extract might be responsible for the amylase inducing property of the isolate. However, Hasan et al. (2017) revealed peptone as the most stimulatory nitrogen source for maximum production of amylases from both Chryseobacterium sp. and Bacillus sp.
Despite the wide applications of OFAT in bioprocess technology, this traditional method is a time-consuming approach and causes misinterpretation of data due to the large number of experiments to be performed. Most importantly, OFAT technique fails to illustrate the interdependent interaction between two factors. The statistical approaches are suitable alternatives to traditional methods of process optimization. In this regard, factorial experimental design such as two-level full factorial design matrix is one of the promising statistical tools that navigate the most influencing variables in enzyme bioprocess. In the present investigation, the amylase activity of strain ALA4 was enhanced using five variables at two different ranges (25 full factorial design) in 32 experimental runs. Among five variables screened, incubation temperature, moisture content, starch, and yeast extract were observed to be the promising parameters that affect the response significantly (P < 0.05). These four factors were chosen further for the optimization studies using CCD with RSM. The CCD was carried out using four factors at five varied ranges. ANOVA results clearly demonstrate the influence of incubation temperature and yeast extract on enhanced amylase yield from strain ALA4 (P < 0.05). In the present context, extracellular amylase yield using CCD of RSM was observed to be increased about twofold in a comparison with OFAT method. A valid correlation between the experimental and predicted values of amylase activity was observed that verified the model, and established the existence of the optimal points. The 3D response graph shows the mutual interconnection between temperature, moisture, starch and yeast extract, and depicted that amylase activity was influenced significantly by incubation temperature and yeast extract concentration. In fact, RSM is a powerful statistical tool for optimizing diversified dependent and independent variables with minimum number of trials to enhance enzyme productivity. Thus, the study showed the successful implementation of statistical optimization to SSF that had eliminated the limitations of OFAT approach, and enhanced the amylase yield from strain ALA4 effectively.
The crude amylases obtained from strain ALA4 was evaluated for its stability at wide range of pH. The enzyme was found stable up to pH 6.0–10.0 for 4 h of incubation, indicating one of the most important characteristics of this isolate. The finding of this study showed superiority to the previous reports of Aygan et al. (2008) and Vijayaraghavan et al. (2015) who demonstrated the stability of crude amylase up to pH 9.0 and 8.0, respectively, from the respective isolates. The alkali-tolerant property of amylases from strain ALA4 for a longer period proved the isolate to be a potent source for varied biotechnological application, as suggested by Pal and Khanum (2010) too. In like manner, the crude amylase of strain ALA4 was observed to be highly stable up to 65 °C for 4 h of incubation. The enzyme retained above 45% of residual activity after longer period of incubation. The finding of the present study strongly agrees with the report of Tiwari et al. (2014) who also observed sustainability of crude amylase from Bacillus sp. up to 65 °C. In contrary to our results, Dash et al. (2015) indicated the stability of amylase up to 50 °C, and observed significant reduction thereafter. The long term temperature stability of amylases obtained from strain ALA4 would be crucial for several industrial applications. Out of eight different metal ions tested, the amylases obtained from strain ALA4 were found to be highly tolerant to all the metal ions except Hg2+. The amylase showed lower stability in terms of residual activity in the presence of Hg2+ ion. These observations were in accordance with the reports of Hernandez et al. (2006) who demonstrated the reduced stability of amylases in the presence of Hg2+. On the other hand, Tiwari et al. (2014) reported amylases from B. tequilensis with stability towards higher concentration of Hg2+.
The extraordinary resistant of amylase to various organic solvent revealed another crucial characteristic of strain ALA4. Similar study reporting the remarkable stability of amylase in the presence of hydrophilic and hydrophobic organic solvents was observed by Li and Yu (2012). The amylase was stable towards all the surfactants, and inhibitors such as EDTA and mercaptoethanol. In like manner, authors reported the existence of surfactant (Oberoi et al. 2001) and inhibitors tolerant amylases (Kikani and Singh 2011). The finding of the present study favoured the reports of Roohi et al. (2013) also who demonstrated reduction in the stability of enzyme in the presence of hydrogen peroxide. Bacterial amylases have several applications in detergent industry. Approximately 90% of commercially available detergents contain amylases (Mitidieri et al. 2006). Amylases are incorporated in the detergents to remove starchy food stains, such as chocolate, custard, gravy, etc. on clothes. In fact, the amylase in the detergent requires its compatibility and potentiality to perform in the presence of the detergents for inclusion. Very few studies have reported the identification of detergent stable amylases from bacterial sources. According to the present context, the amylase of strain ALA4 was stable towards commercially available detergents, thereby suggesting its suitability in the formulation of detergents. Similar finding was reported by Bajpai et al. (2015) with other bacterial species.
In view of the current demand of amylases in various industries, the amylase from strain ALA4 could be a potent substitute of chemical processes involved in starch hydrolysis. The amylases obtained from strain ALA4 could be used in the adverse industrial processes for its commercialization and thus, it could prove to be a better replacement of the existing enzymes on the market. The amylase activity of G. arilaitensis strain ALA4 achieved using CCD was found to be higher than most of the previous reports demonstrating the amylase yield from varied bacterial sources by utilizing various agro-residues (Table 7).
The present investigation evaluated the hyper-production of amylase from G. arilaitensis strain ALA4 using goat dung as an efficient substrate under SSF. The interdependent interaction among variables was investigated using CCD of RSM, and depicted about twofold amylase yield (4572.53 ± 41.71 U/g) in a comparison with traditional method. The amylase productivity from strain ALA4 was significantly influenced by temperature and yeast extract concentration, thereby implying that enhanced yield of amylase can be obtained by maintaining the temperature, and adjusting the yeast extract concentration of the goat dung medium. Further, the amylases obtained were observed to be thermo-alkali stable, and resistant to varied metal ions. Most importantly, the amylases of strain ALA4 were resistant to various organic solvents, surfactants, inhibitors, and commercially available detergents. The goat dung is proved to be an ideal inexpensive substrate in enzyme bioprocess and suggests its implementation in sustainable waste management practices in socially as well as economical manner.
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CA and AK designed and carried out the experiments. CA and AK wrote the manuscript. PA verified the results and corrected the language of the manuscript. All authors read and approved the final manuscript.
Authors thank Maulana Azad National Fellowship (F1-17.1/2015-16/MANF-2015-17-BIH-60730), University Grants Commission, Delhi, India for the partial support.
The authors declare that they have no competing interests.
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Aarti, C., Khusro, A. & Agastian, P. Goat dung as a feedstock for hyper-production of amylase from Glutamicibacter arilaitensis strain ALA4. Bioresour. Bioprocess. 4, 43 (2017). https://doi.org/10.1186/s40643-017-0174-4
- 25 factorial design, solid-state fermentation
- Stability, central composite design